Hb_006816_290

Information

Type -
Description -
Location Contig6816: 186840-191740
Sequence    

Annotation

kegg
ID pop:POPTR_0005s02010g
description calmodulin-binding protein 60-C
nr
ID XP_012088938.1
description PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
swissprot
ID Q9FKL6
description Calmodulin-binding protein 60 B OS=Arabidopsis thaliana GN=CBP60B PE=2 SV=1
trembl
ID A0A067JTT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23248 PE=4 SV=1
Gene Ontology
ID GO:0007165
description calmodulin-binding protein 60-c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53822: 186935-188448 , PASA_asmbl_53823: 187402-187673
cDNA
(Sanger)
(ID:Location)		 005_G24.ab1: 187080-188448 , 020_H07.ab1: 187050-188402 , 052_F15.ab1: 187049-188406

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_290 0.0 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
2 Hb_001416_040 0.080387025 - - acid phosphatase, putative [Ricinus communis]
3 Hb_000327_240 0.0986053974 - - PREDICTED: interaptin-like [Jatropha curcas]
4 Hb_002400_270 0.1048016047 - - PREDICTED: probable sucrose-phosphate synthase 1 isoform X1 [Jatropha curcas]
5 Hb_002111_050 0.1118850694 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
6 Hb_001001_160 0.1131228925 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
7 Hb_007447_010 0.113282054 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
8 Hb_000984_180 0.1141158444 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]
9 Hb_000733_060 0.1206743754 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
10 Hb_002659_140 0.1254159718 - - hypothetical protein JCGZ_08031 [Jatropha curcas]
11 Hb_000768_030 0.1254746423 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
12 Hb_023226_060 0.1266518781 - - unnamed protein product [Vitis vinifera]
13 Hb_011316_110 0.1274436968 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
14 Hb_000015_010 0.131370339 - - -
15 Hb_000491_080 0.1316474907 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
16 Hb_001341_040 0.1329196506 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
17 Hb_002377_040 0.134408234 - - serine/threonine protein kinase, putative [Ricinus communis]
18 Hb_002716_150 0.1351929125 - - starch synthase isoform I [Manihot esculenta]
19 Hb_000005_050 0.1362609065 - - PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]
20 Hb_001040_170 0.1375404914 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006816_290 Hb_006816_290 Hb_001416_040 Hb_001416_040 Hb_006816_290--Hb_001416_040 Hb_000327_240 Hb_000327_240 Hb_006816_290--Hb_000327_240 Hb_002400_270 Hb_002400_270 Hb_006816_290--Hb_002400_270 Hb_002111_050 Hb_002111_050 Hb_006816_290--Hb_002111_050 Hb_001001_160 Hb_001001_160 Hb_006816_290--Hb_001001_160 Hb_007447_010 Hb_007447_010 Hb_006816_290--Hb_007447_010 Hb_001416_040--Hb_000327_240 Hb_000984_180 Hb_000984_180 Hb_001416_040--Hb_000984_180 Hb_001416_040--Hb_002400_270 Hb_000491_080 Hb_000491_080 Hb_001416_040--Hb_000491_080 Hb_001433_170 Hb_001433_170 Hb_001416_040--Hb_001433_170 Hb_000327_240--Hb_002400_270 Hb_001040_170 Hb_001040_170 Hb_000327_240--Hb_001040_170 Hb_000284_200 Hb_000284_200 Hb_000327_240--Hb_000284_200 Hb_000327_240--Hb_000984_180 Hb_011316_110 Hb_011316_110 Hb_002400_270--Hb_011316_110 Hb_000742_250 Hb_000742_250 Hb_002400_270--Hb_000742_250 Hb_002818_040 Hb_002818_040 Hb_002400_270--Hb_002818_040 Hb_000369_060 Hb_000369_060 Hb_002400_270--Hb_000369_060 Hb_002659_140 Hb_002659_140 Hb_002111_050--Hb_002659_140 Hb_001437_300 Hb_001437_300 Hb_002111_050--Hb_001437_300 Hb_011224_080 Hb_011224_080 Hb_002111_050--Hb_011224_080 Hb_000352_110 Hb_000352_110 Hb_002111_050--Hb_000352_110 Hb_002226_030 Hb_002226_030 Hb_002111_050--Hb_002226_030 Hb_000025_200 Hb_000025_200 Hb_001001_160--Hb_000025_200 Hb_010174_130 Hb_010174_130 Hb_001001_160--Hb_010174_130 Hb_000733_060 Hb_000733_060 Hb_001001_160--Hb_000733_060 Hb_000771_110 Hb_000771_110 Hb_001001_160--Hb_000771_110 Hb_000001_020 Hb_000001_020 Hb_001001_160--Hb_000001_020 Hb_002377_040 Hb_002377_040 Hb_001001_160--Hb_002377_040 Hb_007447_010--Hb_011316_110 Hb_000077_050 Hb_000077_050 Hb_007447_010--Hb_000077_050 Hb_000107_100 Hb_000107_100 Hb_007447_010--Hb_000107_100 Hb_022256_040 Hb_022256_040 Hb_007447_010--Hb_022256_040 Hb_007447_010--Hb_001040_170 Hb_001584_110 Hb_001584_110 Hb_007447_010--Hb_001584_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.2507 6.07067 6.40064 3.00836 60.2421 37.1243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.6237 15.6011 28.0252 5.48661 14.3005

CAGE analysis