Hb_000359_250

Information

Type -
Description -
Location Contig359: 248122-252710
Sequence    

Annotation

kegg
ID vvi:100243250
description pentatricopeptide repeat-containing protein At2g26790, mitochondrial
nr
ID XP_002268064.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial [Vitis vinifera]
swissprot
ID Q9FIX3
description Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
trembl
ID A0A0B2SGB4
description Pentatricopeptide repeat-containing protein, mitochondrial OS=Glycine soja GN=glysoja_031680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_250 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial [Vitis vinifera]
2 Hb_003216_080 0.0777479749 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
3 Hb_003938_080 0.0889708666 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
4 Hb_000072_220 0.0895864315 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
5 Hb_020000_020 0.0911830321 - - Troponin C, skeletal muscle, putative [Ricinus communis]
6 Hb_001245_070 0.0913985919 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
7 Hb_011030_010 0.0965429938 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
8 Hb_003609_030 0.0975312365 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
9 Hb_011316_050 0.09762859 - - hypothetical protein CICLE_v10004643mg [Citrus clementina]
10 Hb_010139_040 0.0999247429 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000093_080 0.100386273 - - hypothetical protein POPTR_0008s09730g [Populus trichocarpa]
12 Hb_000453_170 0.1015972625 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_005054_180 0.103000945 - - coronatine-insensitive 1 [Hevea brasiliensis]
14 Hb_000502_050 0.1034668874 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
15 Hb_004155_010 0.1037775351 - - PREDICTED: la protein 1 [Jatropha curcas]
16 Hb_000195_020 0.104013517 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial [Jatropha curcas]
17 Hb_006316_040 0.1076515416 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
18 Hb_124315_020 0.107879845 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000721_010 0.1096389325 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001599_030 0.1124733318 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]

Gene co-expression network

sample Hb_000359_250 Hb_000359_250 Hb_003216_080 Hb_003216_080 Hb_000359_250--Hb_003216_080 Hb_003938_080 Hb_003938_080 Hb_000359_250--Hb_003938_080 Hb_000072_220 Hb_000072_220 Hb_000359_250--Hb_000072_220 Hb_020000_020 Hb_020000_020 Hb_000359_250--Hb_020000_020 Hb_001245_070 Hb_001245_070 Hb_000359_250--Hb_001245_070 Hb_011030_010 Hb_011030_010 Hb_000359_250--Hb_011030_010 Hb_003216_080--Hb_003938_080 Hb_009411_010 Hb_009411_010 Hb_003216_080--Hb_009411_010 Hb_001322_210 Hb_001322_210 Hb_003216_080--Hb_001322_210 Hb_003544_100 Hb_003544_100 Hb_003216_080--Hb_003544_100 Hb_000107_500 Hb_000107_500 Hb_003216_080--Hb_000107_500 Hb_001930_010 Hb_001930_010 Hb_003216_080--Hb_001930_010 Hb_003938_080--Hb_009411_010 Hb_003938_080--Hb_003544_100 Hb_000101_240 Hb_000101_240 Hb_003938_080--Hb_000101_240 Hb_015884_030 Hb_015884_030 Hb_003938_080--Hb_015884_030 Hb_000502_050 Hb_000502_050 Hb_003938_080--Hb_000502_050 Hb_004221_020 Hb_004221_020 Hb_000072_220--Hb_004221_020 Hb_002835_370 Hb_002835_370 Hb_000072_220--Hb_002835_370 Hb_010139_040 Hb_010139_040 Hb_000072_220--Hb_010139_040 Hb_172632_080 Hb_172632_080 Hb_000072_220--Hb_172632_080 Hb_009548_020 Hb_009548_020 Hb_000072_220--Hb_009548_020 Hb_001675_180 Hb_001675_180 Hb_000072_220--Hb_001675_180 Hb_023386_040 Hb_023386_040 Hb_020000_020--Hb_023386_040 Hb_000820_170 Hb_000820_170 Hb_020000_020--Hb_000820_170 Hb_003609_030 Hb_003609_030 Hb_020000_020--Hb_003609_030 Hb_000179_030 Hb_000179_030 Hb_020000_020--Hb_000179_030 Hb_004370_030 Hb_004370_030 Hb_020000_020--Hb_004370_030 Hb_154745_010 Hb_154745_010 Hb_020000_020--Hb_154745_010 Hb_124315_020 Hb_124315_020 Hb_001245_070--Hb_124315_020 Hb_000661_050 Hb_000661_050 Hb_001245_070--Hb_000661_050 Hb_175338_030 Hb_175338_030 Hb_001245_070--Hb_175338_030 Hb_000453_170 Hb_000453_170 Hb_001245_070--Hb_000453_170 Hb_000392_300 Hb_000392_300 Hb_001245_070--Hb_000392_300 Hb_000244_250 Hb_000244_250 Hb_001245_070--Hb_000244_250 Hb_033187_050 Hb_033187_050 Hb_011030_010--Hb_033187_050 Hb_003531_060 Hb_003531_060 Hb_011030_010--Hb_003531_060 Hb_000915_050 Hb_000915_050 Hb_011030_010--Hb_000915_050 Hb_005321_020 Hb_005321_020 Hb_011030_010--Hb_005321_020 Hb_002163_030 Hb_002163_030 Hb_011030_010--Hb_002163_030 Hb_000283_070 Hb_000283_070 Hb_011030_010--Hb_000283_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.58601 1.72301 1.15601 0.793952 1.77058 3.40798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04982 1.65137 2.31752 1.07491 1.52947

CAGE analysis