Hb_004324_240

Information

Type -
Description -
Location Contig4324: 150085-154462
Sequence    

Annotation

kegg
ID rcu:RCOM_1580570
description tetrahydrofolylpolyglutamate synthase, putative (EC:6.3.2.17)
nr
ID XP_002513590.1
description tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis]
swissprot
ID Q05865
description Folylpolyglutamate synthase OS=Bacillus subtilis (strain 168) GN=folC PE=3 SV=2
trembl
ID B9RIM1
description Tetrahydrofolylpolyglutamate synthase, putative OS=Ricinus communis GN=RCOM_1580570 PE=4 SV=1
Gene Ontology
ID GO:0016881
description folylpolyglutamate synthetase family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42323: 149952-154631
cDNA
(Sanger)
(ID:Location)		 020_B05.ab1: 152063-154631

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_240 0.0 - - tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis]
2 Hb_005460_030 0.1452721235 - - PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
3 Hb_018954_020 0.1503315492 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Jatropha curcas]
4 Hb_001916_120 0.1603171242 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
5 Hb_002159_030 0.1657088707 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
6 Hb_000016_030 0.1705964775 - - PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Jatropha curcas]
7 Hb_000215_260 0.1719345098 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
8 Hb_030627_040 0.1726263007 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
9 Hb_005271_080 0.1806372099 - - receptor kinase, putative [Ricinus communis]
10 Hb_001040_120 0.1817154167 - - allantoinase, putative [Ricinus communis]
11 Hb_003436_050 0.1824024289 - - arf gtpase-activating protein, putative [Ricinus communis]
12 Hb_002159_040 0.1831283887 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
13 Hb_001390_010 0.1831648717 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
14 Hb_000497_230 0.1863110151 - - PREDICTED: probable protein S-acyltransferase 6 [Jatropha curcas]
15 Hb_000199_080 0.1913640721 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000329_420 0.1924002032 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
17 Hb_012404_070 0.1926662808 - - PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
18 Hb_002235_130 0.1928311779 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002070_070 0.1928327574 - - ATP binding protein, putative [Ricinus communis]
20 Hb_000029_320 0.1935297885 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]

Gene co-expression network

sample Hb_004324_240 Hb_004324_240 Hb_005460_030 Hb_005460_030 Hb_004324_240--Hb_005460_030 Hb_018954_020 Hb_018954_020 Hb_004324_240--Hb_018954_020 Hb_001916_120 Hb_001916_120 Hb_004324_240--Hb_001916_120 Hb_002159_030 Hb_002159_030 Hb_004324_240--Hb_002159_030 Hb_000016_030 Hb_000016_030 Hb_004324_240--Hb_000016_030 Hb_000215_260 Hb_000215_260 Hb_004324_240--Hb_000215_260 Hb_004143_070 Hb_004143_070 Hb_005460_030--Hb_004143_070 Hb_000181_310 Hb_000181_310 Hb_005460_030--Hb_000181_310 Hb_005460_030--Hb_002159_030 Hb_030627_040 Hb_030627_040 Hb_005460_030--Hb_030627_040 Hb_003216_120 Hb_003216_120 Hb_005460_030--Hb_003216_120 Hb_000497_230 Hb_000497_230 Hb_018954_020--Hb_000497_230 Hb_002159_040 Hb_002159_040 Hb_018954_020--Hb_002159_040 Hb_008406_140 Hb_008406_140 Hb_018954_020--Hb_008406_140 Hb_000566_100 Hb_000566_100 Hb_018954_020--Hb_000566_100 Hb_000197_210 Hb_000197_210 Hb_018954_020--Hb_000197_210 Hb_002235_130 Hb_002235_130 Hb_018954_020--Hb_002235_130 Hb_001138_010 Hb_001138_010 Hb_001916_120--Hb_001138_010 Hb_000252_090 Hb_000252_090 Hb_001916_120--Hb_000252_090 Hb_001277_410 Hb_001277_410 Hb_001916_120--Hb_001277_410 Hb_000365_260 Hb_000365_260 Hb_001916_120--Hb_000365_260 Hb_001916_120--Hb_018954_020 Hb_002159_030--Hb_002159_040 Hb_006882_010 Hb_006882_010 Hb_002159_030--Hb_006882_010 Hb_000441_160 Hb_000441_160 Hb_002159_030--Hb_000441_160 Hb_000329_490 Hb_000329_490 Hb_002159_030--Hb_000329_490 Hb_000244_240 Hb_000244_240 Hb_002159_030--Hb_000244_240 Hb_002159_030--Hb_004143_070 Hb_000270_160 Hb_000270_160 Hb_000016_030--Hb_000270_160 Hb_000302_160 Hb_000302_160 Hb_000016_030--Hb_000302_160 Hb_000198_070 Hb_000198_070 Hb_000016_030--Hb_000198_070 Hb_004374_080 Hb_004374_080 Hb_000016_030--Hb_004374_080 Hb_000365_160 Hb_000365_160 Hb_000016_030--Hb_000365_160 Hb_000329_420 Hb_000329_420 Hb_000215_260--Hb_000329_420 Hb_023327_030 Hb_023327_030 Hb_000215_260--Hb_023327_030 Hb_000215_260--Hb_000497_230 Hb_063716_010 Hb_063716_010 Hb_000215_260--Hb_063716_010 Hb_015026_060 Hb_015026_060 Hb_000215_260--Hb_015026_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.21635 0.204408 0.219839 0.852326 1.3388 1.64826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.218603 0.171981 0.138479 0.0588411 0.56539

CAGE analysis