Hb_023327_030

Information

Type -
Description -
Location Contig23327: 25597-26337
Sequence    

Annotation

kegg
ID pop:POPTR_0001s09030g
description POPTRDRAFT_180473; P21 family protein
nr
ID AHA83528.1
description osmotin-like protein [Hevea brasiliensis]
swissprot
ID P50700
description Osmotin-like protein OSM34 OS=Arabidopsis thaliana GN=OSM34 PE=2 SV=2
trembl
ID W5RRV3
description Osmotin-like protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0009816
description p21 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24500: 25578-26546
cDNA
(Sanger)
(ID:Location)		 011_P09.ab1: 25580-26392 , 033_I22.ab1: 25580-26296 , 042_E11.ab1: 25580-26356 , 045_J14.ab1: 25580-26359 , 049_G10.ab1: 25580-26027

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023327_030 0.0 - - osmotin-like protein [Hevea brasiliensis]
2 Hb_002475_050 0.1106950064 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
3 Hb_005000_270 0.1134192878 - - unnamed protein product [Vitis vinifera]
4 Hb_000256_270 0.1144779801 - - PREDICTED: large proline-rich protein bag6-B isoform X1 [Jatropha curcas]
5 Hb_079326_010 0.1190273239 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
6 Hb_002918_070 0.1224330786 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
7 Hb_003716_020 0.1236453484 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
8 Hb_083043_010 0.1252510565 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
9 Hb_002837_070 0.1275696623 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
10 Hb_002986_050 0.128447918 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
11 Hb_003581_020 0.1310751852 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
12 Hb_113216_010 0.1323757486 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
13 Hb_000248_050 0.1359006874 - - PREDICTED: uncharacterized protein LOC105647198 isoform X3 [Jatropha curcas]
14 Hb_002955_010 0.13746487 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
15 Hb_000441_160 0.137535659 - - ARF GTPase activator, putative [Ricinus communis]
16 Hb_000372_040 0.1386086704 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_015026_060 0.1391255354 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
18 Hb_001582_030 0.1400876567 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
19 Hb_004881_050 0.1401673132 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
20 Hb_003711_040 0.140207351 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_023327_030 Hb_023327_030 Hb_002475_050 Hb_002475_050 Hb_023327_030--Hb_002475_050 Hb_005000_270 Hb_005000_270 Hb_023327_030--Hb_005000_270 Hb_000256_270 Hb_000256_270 Hb_023327_030--Hb_000256_270 Hb_079326_010 Hb_079326_010 Hb_023327_030--Hb_079326_010 Hb_002918_070 Hb_002918_070 Hb_023327_030--Hb_002918_070 Hb_003716_020 Hb_003716_020 Hb_023327_030--Hb_003716_020 Hb_000372_040 Hb_000372_040 Hb_002475_050--Hb_000372_040 Hb_002475_050--Hb_079326_010 Hb_002986_050 Hb_002986_050 Hb_002475_050--Hb_002986_050 Hb_004881_050 Hb_004881_050 Hb_002475_050--Hb_004881_050 Hb_002739_080 Hb_002739_080 Hb_002475_050--Hb_002739_080 Hb_002475_050--Hb_005000_270 Hb_001582_030 Hb_001582_030 Hb_005000_270--Hb_001582_030 Hb_005000_270--Hb_002918_070 Hb_000134_360 Hb_000134_360 Hb_005000_270--Hb_000134_360 Hb_005129_050 Hb_005129_050 Hb_005000_270--Hb_005129_050 Hb_000212_280 Hb_000212_280 Hb_005000_270--Hb_000212_280 Hb_005000_270--Hb_003716_020 Hb_002955_010 Hb_002955_010 Hb_000256_270--Hb_002955_010 Hb_001477_010 Hb_001477_010 Hb_000256_270--Hb_001477_010 Hb_000565_020 Hb_000565_020 Hb_000256_270--Hb_000565_020 Hb_113216_010 Hb_113216_010 Hb_000256_270--Hb_113216_010 Hb_000256_270--Hb_000372_040 Hb_079326_010--Hb_004881_050 Hb_079326_010--Hb_000372_040 Hb_011644_020 Hb_011644_020 Hb_079326_010--Hb_011644_020 Hb_005368_010 Hb_005368_010 Hb_079326_010--Hb_005368_010 Hb_079326_010--Hb_000134_360 Hb_000211_090 Hb_000211_090 Hb_002918_070--Hb_000211_090 Hb_002918_070--Hb_000212_280 Hb_001486_120 Hb_001486_120 Hb_002918_070--Hb_001486_120 Hb_000779_040 Hb_000779_040 Hb_002918_070--Hb_000779_040 Hb_002918_070--Hb_000134_360 Hb_011497_010 Hb_011497_010 Hb_003716_020--Hb_011497_010 Hb_007668_020 Hb_007668_020 Hb_003716_020--Hb_007668_020 Hb_003581_020 Hb_003581_020 Hb_003716_020--Hb_003581_020 Hb_000849_100 Hb_000849_100 Hb_003716_020--Hb_000849_100 Hb_006002_030 Hb_006002_030 Hb_003716_020--Hb_006002_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
394.996 67.9117 56.0733 158.554 462.396 772.355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
160.311 62.6368 117.633 87.543 16.5118

CAGE analysis