Hb_001277_410

Information

Type -
Description -
Location Contig1277: 396531-400488
Sequence    

Annotation

kegg
ID rcu:RCOM_0911120
description ice binding protein, putative
nr
ID XP_012069694.1
description PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KVM6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02224 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ice binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08506: 396504-400486 , PASA_asmbl_08507: 396883-398171 , PASA_asmbl_08509: 400043-400187
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_410 0.0 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
2 Hb_001916_120 0.154871229 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
3 Hb_001138_010 0.19453516 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000252_090 0.2066987293 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
5 Hb_000258_020 0.2165860579 - - PREDICTED: RING-H2 finger protein ATL74 [Jatropha curcas]
6 Hb_101020_010 0.2268420953 - - -
7 Hb_020549_010 0.2332660402 - - PREDICTED: uncharacterized protein LOC105638664 isoform X2 [Jatropha curcas]
8 Hb_034667_020 0.2342791675 - - conserved hypothetical protein [Ricinus communis]
9 Hb_033642_100 0.2372080019 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Prunus mume]
10 Hb_000160_150 0.2380622295 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
11 Hb_000365_260 0.2389105177 - - conserved hypothetical protein [Ricinus communis]
12 Hb_054436_010 0.2419476608 - - PREDICTED: uncharacterized protein LOC105638666 [Jatropha curcas]
13 Hb_004657_090 0.2421693994 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
14 Hb_000100_130 0.2441797649 - - hypothetical protein VITISV_026702 [Vitis vinifera]
15 Hb_013877_020 0.2447442137 - - Cytochrome P450 [Theobroma cacao]
16 Hb_005527_080 0.2457229415 - - hypothetical protein CICLE_v10023951mg, partial [Citrus clementina]
17 Hb_018954_020 0.2459721452 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Jatropha curcas]
18 Hb_001488_340 0.2479635321 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
19 Hb_000997_410 0.2495200453 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
20 Hb_012384_050 0.2500585619 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]

Gene co-expression network

sample Hb_001277_410 Hb_001277_410 Hb_001916_120 Hb_001916_120 Hb_001277_410--Hb_001916_120 Hb_001138_010 Hb_001138_010 Hb_001277_410--Hb_001138_010 Hb_000252_090 Hb_000252_090 Hb_001277_410--Hb_000252_090 Hb_000258_020 Hb_000258_020 Hb_001277_410--Hb_000258_020 Hb_101020_010 Hb_101020_010 Hb_001277_410--Hb_101020_010 Hb_020549_010 Hb_020549_010 Hb_001277_410--Hb_020549_010 Hb_001916_120--Hb_001138_010 Hb_001916_120--Hb_000252_090 Hb_000365_260 Hb_000365_260 Hb_001916_120--Hb_000365_260 Hb_004324_240 Hb_004324_240 Hb_001916_120--Hb_004324_240 Hb_018954_020 Hb_018954_020 Hb_001916_120--Hb_018954_020 Hb_001138_010--Hb_000252_090 Hb_000605_010 Hb_000605_010 Hb_001138_010--Hb_000605_010 Hb_001677_050 Hb_001677_050 Hb_001138_010--Hb_001677_050 Hb_000156_030 Hb_000156_030 Hb_001138_010--Hb_000156_030 Hb_003540_140 Hb_003540_140 Hb_001138_010--Hb_003540_140 Hb_000329_540 Hb_000329_540 Hb_000252_090--Hb_000329_540 Hb_000329_420 Hb_000329_420 Hb_000252_090--Hb_000329_420 Hb_000252_090--Hb_000156_030 Hb_000441_230 Hb_000441_230 Hb_000252_090--Hb_000441_230 Hb_000258_020--Hb_001916_120 Hb_000927_040 Hb_000927_040 Hb_000258_020--Hb_000927_040 Hb_002234_220 Hb_002234_220 Hb_000258_020--Hb_002234_220 Hb_000258_020--Hb_001138_010 Hb_000028_640 Hb_000028_640 Hb_000258_020--Hb_000028_640 Hb_009693_030 Hb_009693_030 Hb_101020_010--Hb_009693_030 Hb_001916_060 Hb_001916_060 Hb_101020_010--Hb_001916_060 Hb_000160_150 Hb_000160_150 Hb_101020_010--Hb_000160_150 Hb_007136_020 Hb_007136_020 Hb_101020_010--Hb_007136_020 Hb_003297_020 Hb_003297_020 Hb_101020_010--Hb_003297_020 Hb_124961_010 Hb_124961_010 Hb_101020_010--Hb_124961_010 Hb_000982_150 Hb_000982_150 Hb_020549_010--Hb_000982_150 Hb_001673_030 Hb_001673_030 Hb_020549_010--Hb_001673_030 Hb_087221_010 Hb_087221_010 Hb_020549_010--Hb_087221_010 Hb_013877_020 Hb_013877_020 Hb_020549_010--Hb_013877_020 Hb_001589_070 Hb_001589_070 Hb_020549_010--Hb_001589_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
114.137 18.4629 30.5648 25.4853 35.543 89.3259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0266 0.935051 0.672929 0.394505 17.01

CAGE analysis