Hb_002234_220

Information

Type transcription factor
Description TF Family: HB
Location Contig2234: 165476-170552
Sequence    

Annotation

kegg
ID rcu:RCOM_1496700
description homeobox protein, putative
nr
ID XP_012090292.1
description PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 [Jatropha curcas]
swissprot
ID Q0WV12
description Homeobox-leucine zipper protein ANTHOCYANINLESS 2 OS=Arabidopsis thaliana GN=ANL2 PE=2 SV=1
trembl
ID B9R9E7
description Homeobox protein, putative OS=Ricinus communis GN=RCOM_1496700 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein anthocyaninless 2-like isoform x4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23189: 164878-165023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002234_220 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 [Jatropha curcas]
2 Hb_002124_020 0.1482750559 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
3 Hb_001741_100 0.1537798617 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
4 Hb_002217_130 0.1592829304 - - galactinol synthase-1 [Manihot esculenta]
5 Hb_000605_010 0.1652788354 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
6 Hb_000200_060 0.1745772005 - - palmitoyl-acyl carrier thioesterase [Medicago truncatula]
7 Hb_073212_010 0.1781645501 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
8 Hb_005568_070 0.1937649885 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
9 Hb_000252_090 0.1997896482 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
10 Hb_000028_630 0.200886873 - - PIN-like protein, partial [Selaginella apoda]
11 Hb_000161_100 0.2078928909 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
12 Hb_001138_010 0.2082812032 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_001892_160 0.208474022 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
14 Hb_004007_150 0.2110185082 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 4 [Jatropha curcas]
15 Hb_007634_020 0.2132881293 - - -
16 Hb_000258_020 0.2157332555 - - PREDICTED: RING-H2 finger protein ATL74 [Jatropha curcas]
17 Hb_000156_030 0.2158454722 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002232_290 0.2159827225 - - -
19 Hb_000094_390 0.220406367 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Nelumbo nucifera]
20 Hb_000559_050 0.2226310062 - - hypothetical protein JCGZ_20429 [Jatropha curcas]

Gene co-expression network

sample Hb_002234_220 Hb_002234_220 Hb_002124_020 Hb_002124_020 Hb_002234_220--Hb_002124_020 Hb_001741_100 Hb_001741_100 Hb_002234_220--Hb_001741_100 Hb_002217_130 Hb_002217_130 Hb_002234_220--Hb_002217_130 Hb_000605_010 Hb_000605_010 Hb_002234_220--Hb_000605_010 Hb_000200_060 Hb_000200_060 Hb_002234_220--Hb_000200_060 Hb_073212_010 Hb_073212_010 Hb_002234_220--Hb_073212_010 Hb_002124_020--Hb_000200_060 Hb_002124_020--Hb_001741_100 Hb_000879_050 Hb_000879_050 Hb_002124_020--Hb_000879_050 Hb_002124_020--Hb_000605_010 Hb_000258_020 Hb_000258_020 Hb_002124_020--Hb_000258_020 Hb_001741_100--Hb_002217_130 Hb_001892_160 Hb_001892_160 Hb_001741_100--Hb_001892_160 Hb_001741_100--Hb_000200_060 Hb_156144_020 Hb_156144_020 Hb_001741_100--Hb_156144_020 Hb_000007_310 Hb_000007_310 Hb_001741_100--Hb_000007_310 Hb_002217_130--Hb_001892_160 Hb_000161_100 Hb_000161_100 Hb_002217_130--Hb_000161_100 Hb_002217_130--Hb_000007_310 Hb_002217_130--Hb_000200_060 Hb_001138_010 Hb_001138_010 Hb_000605_010--Hb_001138_010 Hb_000605_010--Hb_073212_010 Hb_001677_050 Hb_001677_050 Hb_000605_010--Hb_001677_050 Hb_000605_010--Hb_000879_050 Hb_088542_010 Hb_088542_010 Hb_000605_010--Hb_088542_010 Hb_134732_010 Hb_134732_010 Hb_000200_060--Hb_134732_010 Hb_000200_060--Hb_000007_310 Hb_073212_010--Hb_088542_010 Hb_004007_150 Hb_004007_150 Hb_073212_010--Hb_004007_150 Hb_012384_050 Hb_012384_050 Hb_073212_010--Hb_012384_050 Hb_001691_050 Hb_001691_050 Hb_073212_010--Hb_001691_050 Hb_001632_010 Hb_001632_010 Hb_073212_010--Hb_001632_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.76742 0.185177 0.135192 0.227332 2.0969 1.44597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0143259 0.109179 0.0113801 0.182593

CAGE analysis