Hb_012384_050

Information

Type -
Description -
Location Contig12384: 73481-74182
Sequence    

Annotation

kegg
ID rcu:RCOM_1279070
description hypothetical protein
nr
ID XP_012081309.1
description PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K1M3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18613 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 016_O16.ab1: 73409-74081 , 024_F14.ab1: 73403-74004

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012384_050 0.0 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
2 Hb_073212_010 0.1569729508 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
3 Hb_000365_260 0.1709273091 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006615_100 0.1754427827 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
5 Hb_003064_030 0.1772994218 - - bromodomain-containing protein, putative [Ricinus communis]
6 Hb_000815_140 0.1808726077 - - cytochrome P450, putative [Ricinus communis]
7 Hb_087221_010 0.1812141803 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
8 Hb_000997_410 0.1844851135 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
9 Hb_010128_070 0.1859132094 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_001677_050 0.1893881489 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
11 Hb_000465_120 0.1911942214 - - PREDICTED: uncharacterized protein LOC105632294 [Jatropha curcas]
12 Hb_129067_010 0.1921974482 - - Cytochrome P450 superfamily protein [Theobroma cacao]
13 Hb_000046_410 0.1933056784 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
14 Hb_000281_010 0.1941941186 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
15 Hb_000849_150 0.1944778949 - - hypothetical protein JCGZ_15099 [Jatropha curcas]
16 Hb_162286_020 0.1963062547 - - PREDICTED: uncharacterized protein LOC105642702 [Jatropha curcas]
17 Hb_000116_460 0.1984682906 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
18 Hb_001916_120 0.1988646737 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
19 Hb_001632_010 0.2009613729 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
20 Hb_001195_150 0.2020628906 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_012384_050 Hb_012384_050 Hb_073212_010 Hb_073212_010 Hb_012384_050--Hb_073212_010 Hb_000365_260 Hb_000365_260 Hb_012384_050--Hb_000365_260 Hb_006615_100 Hb_006615_100 Hb_012384_050--Hb_006615_100 Hb_003064_030 Hb_003064_030 Hb_012384_050--Hb_003064_030 Hb_000815_140 Hb_000815_140 Hb_012384_050--Hb_000815_140 Hb_087221_010 Hb_087221_010 Hb_012384_050--Hb_087221_010 Hb_088542_010 Hb_088542_010 Hb_073212_010--Hb_088542_010 Hb_004007_150 Hb_004007_150 Hb_073212_010--Hb_004007_150 Hb_000605_010 Hb_000605_010 Hb_073212_010--Hb_000605_010 Hb_001691_050 Hb_001691_050 Hb_073212_010--Hb_001691_050 Hb_001632_010 Hb_001632_010 Hb_073212_010--Hb_001632_010 Hb_162286_020 Hb_162286_020 Hb_000365_260--Hb_162286_020 Hb_000179_200 Hb_000179_200 Hb_000365_260--Hb_000179_200 Hb_001268_210 Hb_001268_210 Hb_000365_260--Hb_001268_210 Hb_001916_120 Hb_001916_120 Hb_000365_260--Hb_001916_120 Hb_002027_220 Hb_002027_220 Hb_000365_260--Hb_002027_220 Hb_000465_120 Hb_000465_120 Hb_000365_260--Hb_000465_120 Hb_007680_020 Hb_007680_020 Hb_006615_100--Hb_007680_020 Hb_010128_070 Hb_010128_070 Hb_006615_100--Hb_010128_070 Hb_000281_010 Hb_000281_010 Hb_006615_100--Hb_000281_010 Hb_001195_150 Hb_001195_150 Hb_006615_100--Hb_001195_150 Hb_000997_410 Hb_000997_410 Hb_006615_100--Hb_000997_410 Hb_002804_050 Hb_002804_050 Hb_006615_100--Hb_002804_050 Hb_009620_030 Hb_009620_030 Hb_003064_030--Hb_009620_030 Hb_080147_040 Hb_080147_040 Hb_003064_030--Hb_080147_040 Hb_035318_010 Hb_035318_010 Hb_003064_030--Hb_035318_010 Hb_121729_020 Hb_121729_020 Hb_003064_030--Hb_121729_020 Hb_000787_170 Hb_000787_170 Hb_003064_030--Hb_000787_170 Hb_003064_030--Hb_010128_070 Hb_000028_160 Hb_000028_160 Hb_000815_140--Hb_000028_160 Hb_000815_140--Hb_003064_030 Hb_000815_140--Hb_010128_070 Hb_000046_410 Hb_000046_410 Hb_000815_140--Hb_000046_410 Hb_000815_140--Hb_162286_020 Hb_010770_010 Hb_010770_010 Hb_087221_010--Hb_010770_010 Hb_176844_010 Hb_176844_010 Hb_087221_010--Hb_176844_010 Hb_087221_010--Hb_073212_010 Hb_020549_010 Hb_020549_010 Hb_087221_010--Hb_020549_010 Hb_000733_040 Hb_000733_040 Hb_087221_010--Hb_000733_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
162.176 27.3012 24.612 10.8941 51.0259 58.1471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.04384 5.32149 11.8731 17.8089 13.9125

CAGE analysis