Hb_000046_410

Information

Type -
Description -
Location Contig46: 302563-305783
Sequence    

Annotation

kegg
ID rcu:RCOM_0680200
description zinc finger protein, putative
nr
ID XP_012069396.1
description PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q9CR50
description RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1
trembl
ID A0A067KV36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02015 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ring finger and chy zinc finger domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_410 0.0 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
2 Hb_000815_140 0.17436014 - - cytochrome P450, putative [Ricinus communis]
3 Hb_012384_050 0.1933056784 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
4 Hb_000028_160 0.1945030326 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
5 Hb_004361_050 0.1983847066 - - ring finger containing protein, putative [Ricinus communis]
6 Hb_176844_010 0.2155780277 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
7 Hb_001138_010 0.2172191243 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_001259_030 0.2187719214 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
9 Hb_001677_050 0.224793104 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
10 Hb_000365_260 0.2270952733 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000313_320 0.229894856 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
12 Hb_003687_200 0.2300715451 - - PREDICTED: uncharacterized protein LOC105632139 [Jatropha curcas]
13 Hb_000878_040 0.230082254 - - PREDICTED: uncharacterized protein LOC105635780 isoform X1 [Jatropha curcas]
14 Hb_000025_750 0.2304308933 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
15 Hb_162286_020 0.2311960491 - - PREDICTED: uncharacterized protein LOC105642702 [Jatropha curcas]
16 Hb_000613_020 0.2328401883 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
17 Hb_000193_150 0.2348621249 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
18 Hb_000849_150 0.2360437229 - - hypothetical protein JCGZ_15099 [Jatropha curcas]
19 Hb_001408_090 0.2370642915 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
20 Hb_001195_110 0.2404469341 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000046_410 Hb_000046_410 Hb_000815_140 Hb_000815_140 Hb_000046_410--Hb_000815_140 Hb_012384_050 Hb_012384_050 Hb_000046_410--Hb_012384_050 Hb_000028_160 Hb_000028_160 Hb_000046_410--Hb_000028_160 Hb_004361_050 Hb_004361_050 Hb_000046_410--Hb_004361_050 Hb_176844_010 Hb_176844_010 Hb_000046_410--Hb_176844_010 Hb_001138_010 Hb_001138_010 Hb_000046_410--Hb_001138_010 Hb_000815_140--Hb_000028_160 Hb_003064_030 Hb_003064_030 Hb_000815_140--Hb_003064_030 Hb_010128_070 Hb_010128_070 Hb_000815_140--Hb_010128_070 Hb_162286_020 Hb_162286_020 Hb_000815_140--Hb_162286_020 Hb_000815_140--Hb_012384_050 Hb_073212_010 Hb_073212_010 Hb_012384_050--Hb_073212_010 Hb_000365_260 Hb_000365_260 Hb_012384_050--Hb_000365_260 Hb_006615_100 Hb_006615_100 Hb_012384_050--Hb_006615_100 Hb_012384_050--Hb_003064_030 Hb_087221_010 Hb_087221_010 Hb_012384_050--Hb_087221_010 Hb_000028_160--Hb_010128_070 Hb_000742_210 Hb_000742_210 Hb_000028_160--Hb_000742_210 Hb_009620_030 Hb_009620_030 Hb_000028_160--Hb_009620_030 Hb_046931_010 Hb_046931_010 Hb_000028_160--Hb_046931_010 Hb_000028_160--Hb_003064_030 Hb_005214_060 Hb_005214_060 Hb_004361_050--Hb_005214_060 Hb_001196_070 Hb_001196_070 Hb_004361_050--Hb_001196_070 Hb_002675_060 Hb_002675_060 Hb_004361_050--Hb_002675_060 Hb_152079_010 Hb_152079_010 Hb_004361_050--Hb_152079_010 Hb_024990_010 Hb_024990_010 Hb_004361_050--Hb_024990_010 Hb_001575_040 Hb_001575_040 Hb_004361_050--Hb_001575_040 Hb_010770_010 Hb_010770_010 Hb_176844_010--Hb_010770_010 Hb_176844_010--Hb_000815_140 Hb_013877_020 Hb_013877_020 Hb_176844_010--Hb_013877_020 Hb_176844_010--Hb_012384_050 Hb_176844_010--Hb_087221_010 Hb_000252_090 Hb_000252_090 Hb_001138_010--Hb_000252_090 Hb_001916_120 Hb_001916_120 Hb_001138_010--Hb_001916_120 Hb_000605_010 Hb_000605_010 Hb_001138_010--Hb_000605_010 Hb_001677_050 Hb_001677_050 Hb_001138_010--Hb_001677_050 Hb_000156_030 Hb_000156_030 Hb_001138_010--Hb_000156_030 Hb_003540_140 Hb_003540_140 Hb_001138_010--Hb_003540_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.8677 2.29851 2.47463 2.22247 6.73606 15.2634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.98057 1.78005 0.946269 5.89519 2.76345

CAGE analysis