Hb_000742_210

Information

Type -
Description -
Location Contig742: 211113-213963
Sequence    

Annotation

kegg
ID rcu:RCOM_1336580
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002523179.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID O64583
description Probable protein phosphatase 2C 28 OS=Arabidopsis thaliana GN=At2g34740 PE=2 SV=2
trembl
ID B9SB19
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_1336580 PE=4 SV=1
Gene Ontology
ID GO:0003824
description protein phosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56504: 211128-212941 , PASA_asmbl_56505: 213117-213997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000742_210 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_000787_170 0.1043348413 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
3 Hb_000939_060 0.1094890081 - - PREDICTED: DNA repair protein REV1 [Jatropha curcas]
4 Hb_001105_010 0.123692954 desease resistance Gene Name: AIG1 PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
5 Hb_080147_040 0.124590627 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
6 Hb_009620_030 0.1266032725 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP59 [Jatropha curcas]
7 Hb_046931_010 0.1286456416 - - hypothetical protein JCGZ_26924 [Jatropha curcas]
8 Hb_032202_110 0.1306050009 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
9 Hb_020000_020 0.1310014825 - - Troponin C, skeletal muscle, putative [Ricinus communis]
10 Hb_012114_060 0.1324157394 - - PREDICTED: uncharacterized protein LOC105645814 [Jatropha curcas]
11 Hb_000394_190 0.1324367439 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
12 Hb_000120_510 0.1342543365 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
13 Hb_002157_190 0.1357616757 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
14 Hb_024990_010 0.1364382892 - - PREDICTED: la protein 1 [Jatropha curcas]
15 Hb_035318_010 0.1364795898 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
16 Hb_000300_360 0.1370280223 - - PREDICTED: exosome component 10 [Jatropha curcas]
17 Hb_000548_050 0.1373799495 - - hypothetical protein POPTR_0008s12570g [Populus trichocarpa]
18 Hb_022693_030 0.137397719 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
19 Hb_007982_070 0.1383560807 - - PREDICTED: protein CPR-5 [Jatropha curcas]
20 Hb_003064_030 0.1386420151 - - bromodomain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000742_210 Hb_000742_210 Hb_000787_170 Hb_000787_170 Hb_000742_210--Hb_000787_170 Hb_000939_060 Hb_000939_060 Hb_000742_210--Hb_000939_060 Hb_001105_010 Hb_001105_010 Hb_000742_210--Hb_001105_010 Hb_080147_040 Hb_080147_040 Hb_000742_210--Hb_080147_040 Hb_009620_030 Hb_009620_030 Hb_000742_210--Hb_009620_030 Hb_046931_010 Hb_046931_010 Hb_000742_210--Hb_046931_010 Hb_000787_170--Hb_000939_060 Hb_000394_190 Hb_000394_190 Hb_000787_170--Hb_000394_190 Hb_000261_250 Hb_000261_250 Hb_000787_170--Hb_000261_250 Hb_003467_010 Hb_003467_010 Hb_000787_170--Hb_003467_010 Hb_035318_010 Hb_035318_010 Hb_000787_170--Hb_035318_010 Hb_000140_330 Hb_000140_330 Hb_000787_170--Hb_000140_330 Hb_000939_060--Hb_000394_190 Hb_031091_010 Hb_031091_010 Hb_000939_060--Hb_031091_010 Hb_001946_300 Hb_001946_300 Hb_000939_060--Hb_001946_300 Hb_001771_120 Hb_001771_120 Hb_000939_060--Hb_001771_120 Hb_000939_060--Hb_000140_330 Hb_007632_110 Hb_007632_110 Hb_001105_010--Hb_007632_110 Hb_135377_010 Hb_135377_010 Hb_001105_010--Hb_135377_010 Hb_001105_010--Hb_003467_010 Hb_006355_010 Hb_006355_010 Hb_001105_010--Hb_006355_010 Hb_009222_010 Hb_009222_010 Hb_001105_010--Hb_009222_010 Hb_000392_050 Hb_000392_050 Hb_001105_010--Hb_000392_050 Hb_000300_360 Hb_000300_360 Hb_080147_040--Hb_000300_360 Hb_080147_040--Hb_009620_030 Hb_001953_150 Hb_001953_150 Hb_080147_040--Hb_001953_150 Hb_006452_160 Hb_006452_160 Hb_080147_040--Hb_006452_160 Hb_005188_060 Hb_005188_060 Hb_080147_040--Hb_005188_060 Hb_140049_020 Hb_140049_020 Hb_080147_040--Hb_140049_020 Hb_001900_120 Hb_001900_120 Hb_009620_030--Hb_001900_120 Hb_017895_020 Hb_017895_020 Hb_009620_030--Hb_017895_020 Hb_147737_010 Hb_147737_010 Hb_009620_030--Hb_147737_010 Hb_002675_040 Hb_002675_040 Hb_009620_030--Hb_002675_040 Hb_006588_050 Hb_006588_050 Hb_009620_030--Hb_006588_050 Hb_011030_010 Hb_011030_010 Hb_046931_010--Hb_011030_010 Hb_019813_010 Hb_019813_010 Hb_046931_010--Hb_019813_010 Hb_000531_090 Hb_000531_090 Hb_046931_010--Hb_000531_090 Hb_010193_050 Hb_010193_050 Hb_046931_010--Hb_010193_050 Hb_046931_010--Hb_000787_170 Hb_000755_030 Hb_000755_030 Hb_046931_010--Hb_000755_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.59339 2.01029 1.7584 0.603989 1.47234 4.4173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.962303 1.2437 0.810039 1.10211 0.845352

CAGE analysis