Hb_000028_160

Information

Type -
Description -
Location Contig28: 151843-155695
Sequence    

Annotation

kegg
ID pop:POPTR_0005s06870g
description POPTRDRAFT_558455; HISTIDINOL DEHYDROGENASE family protein
nr
ID XP_012064631.1
description PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
swissprot
ID Q8GXN6
description Vacuolar protein sorting-associated protein 20 homolog 1 OS=Arabidopsis thaliana GN=VPS20.1 PE=1 SV=1
trembl
ID A0A067LAQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22917 PE=4 SV=1
Gene Ontology
ID GO:0000815
description vacuolar protein sorting-associated protein 20 homolog 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_160 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
2 Hb_000815_140 0.1401384378 - - cytochrome P450, putative [Ricinus communis]
3 Hb_010128_070 0.1536143542 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_000742_210 0.1538035914 - - protein phosphatase 2c, putative [Ricinus communis]
5 Hb_009620_030 0.1578299273 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP59 [Jatropha curcas]
6 Hb_046931_010 0.1596597179 - - hypothetical protein JCGZ_26924 [Jatropha curcas]
7 Hb_003064_030 0.1617039564 - - bromodomain-containing protein, putative [Ricinus communis]
8 Hb_003106_150 0.1656732715 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
9 Hb_000415_060 0.16807568 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
10 Hb_001575_040 0.1688610224 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 isoform X2 [Jatropha curcas]
11 Hb_000193_150 0.1688808589 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
12 Hb_152079_010 0.1706783588 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
13 Hb_001301_210 0.1714874964 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
14 Hb_000531_090 0.1730843911 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
15 Hb_162286_020 0.1732555545 - - PREDICTED: uncharacterized protein LOC105642702 [Jatropha curcas]
16 Hb_000270_560 0.1733358582 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
17 Hb_000120_510 0.174296811 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
18 Hb_002893_150 0.175323821 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
19 Hb_011030_010 0.176046994 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
20 Hb_000244_240 0.1770955648 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000028_160 Hb_000028_160 Hb_000815_140 Hb_000815_140 Hb_000028_160--Hb_000815_140 Hb_010128_070 Hb_010128_070 Hb_000028_160--Hb_010128_070 Hb_000742_210 Hb_000742_210 Hb_000028_160--Hb_000742_210 Hb_009620_030 Hb_009620_030 Hb_000028_160--Hb_009620_030 Hb_046931_010 Hb_046931_010 Hb_000028_160--Hb_046931_010 Hb_003064_030 Hb_003064_030 Hb_000028_160--Hb_003064_030 Hb_000815_140--Hb_003064_030 Hb_000815_140--Hb_010128_070 Hb_000046_410 Hb_000046_410 Hb_000815_140--Hb_000046_410 Hb_162286_020 Hb_162286_020 Hb_000815_140--Hb_162286_020 Hb_012384_050 Hb_012384_050 Hb_000815_140--Hb_012384_050 Hb_003106_150 Hb_003106_150 Hb_010128_070--Hb_003106_150 Hb_000281_010 Hb_000281_010 Hb_010128_070--Hb_000281_010 Hb_017075_030 Hb_017075_030 Hb_010128_070--Hb_017075_030 Hb_010128_070--Hb_009620_030 Hb_006615_100 Hb_006615_100 Hb_010128_070--Hb_006615_100 Hb_000116_460 Hb_000116_460 Hb_010128_070--Hb_000116_460 Hb_000787_170 Hb_000787_170 Hb_000742_210--Hb_000787_170 Hb_000939_060 Hb_000939_060 Hb_000742_210--Hb_000939_060 Hb_001105_010 Hb_001105_010 Hb_000742_210--Hb_001105_010 Hb_080147_040 Hb_080147_040 Hb_000742_210--Hb_080147_040 Hb_000742_210--Hb_009620_030 Hb_000742_210--Hb_046931_010 Hb_009620_030--Hb_080147_040 Hb_001900_120 Hb_001900_120 Hb_009620_030--Hb_001900_120 Hb_017895_020 Hb_017895_020 Hb_009620_030--Hb_017895_020 Hb_147737_010 Hb_147737_010 Hb_009620_030--Hb_147737_010 Hb_002675_040 Hb_002675_040 Hb_009620_030--Hb_002675_040 Hb_006588_050 Hb_006588_050 Hb_009620_030--Hb_006588_050 Hb_011030_010 Hb_011030_010 Hb_046931_010--Hb_011030_010 Hb_019813_010 Hb_019813_010 Hb_046931_010--Hb_019813_010 Hb_000531_090 Hb_000531_090 Hb_046931_010--Hb_000531_090 Hb_010193_050 Hb_010193_050 Hb_046931_010--Hb_010193_050 Hb_046931_010--Hb_000787_170 Hb_000755_030 Hb_000755_030 Hb_046931_010--Hb_000755_030 Hb_003064_030--Hb_009620_030 Hb_003064_030--Hb_080147_040 Hb_035318_010 Hb_035318_010 Hb_003064_030--Hb_035318_010 Hb_121729_020 Hb_121729_020 Hb_003064_030--Hb_121729_020 Hb_003064_030--Hb_000787_170 Hb_003064_030--Hb_010128_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.76996 3.01503 1.34302 1.40545 1.59959 6.54862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.06925 0.881071 1.08259 1.60271 1.33266

CAGE analysis