Hb_000733_040

Information

Type -
Description -
Location Contig733: 21768-22391
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20310g
description POPTRDRAFT_822434; hypothetical protein
nr
ID XP_002316248.1
description hypothetical protein POPTR_0010s20310g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HT34
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20310g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56147: 23302-25838
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000733_040 0.0 - - hypothetical protein POPTR_0010s20310g [Populus trichocarpa]
2 Hb_129067_010 0.1701946895 - - Cytochrome P450 superfamily protein [Theobroma cacao]
3 Hb_088542_010 0.1739592075 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
4 Hb_089140_060 0.1779091288 - - Uncharacterized protein TCM_037529 [Theobroma cacao]
5 Hb_073212_010 0.1804641194 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
6 Hb_040506_010 0.1994358905 - - protein binding protein, putative [Ricinus communis]
7 Hb_001691_050 0.2021244721 - - -
8 Hb_000028_630 0.2025234353 - - PIN-like protein, partial [Selaginella apoda]
9 Hb_001632_010 0.2104511698 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
10 Hb_012384_050 0.2203801362 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
11 Hb_000605_010 0.2299689083 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
12 Hb_004307_040 0.2378890649 - - -
13 Hb_001377_050 0.2426509941 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
14 Hb_029510_010 0.2454714122 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
15 Hb_011639_070 0.2476648291 - - PREDICTED: uncharacterized protein LOC105636024 isoform X2 [Jatropha curcas]
16 Hb_000815_100 0.2500580684 - - -
17 Hb_001677_050 0.2506302123 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
18 Hb_002929_130 0.2511073507 - - phosphofructokinase [Hevea brasiliensis]
19 Hb_087221_010 0.2537692002 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
20 Hb_031862_170 0.2557601736 - - immunophilin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000733_040 Hb_000733_040 Hb_129067_010 Hb_129067_010 Hb_000733_040--Hb_129067_010 Hb_088542_010 Hb_088542_010 Hb_000733_040--Hb_088542_010 Hb_089140_060 Hb_089140_060 Hb_000733_040--Hb_089140_060 Hb_073212_010 Hb_073212_010 Hb_000733_040--Hb_073212_010 Hb_040506_010 Hb_040506_010 Hb_000733_040--Hb_040506_010 Hb_001691_050 Hb_001691_050 Hb_000733_040--Hb_001691_050 Hb_129067_010--Hb_088542_010 Hb_001632_010 Hb_001632_010 Hb_129067_010--Hb_001632_010 Hb_129067_010--Hb_073212_010 Hb_095471_010 Hb_095471_010 Hb_129067_010--Hb_095471_010 Hb_012384_050 Hb_012384_050 Hb_129067_010--Hb_012384_050 Hb_088542_010--Hb_001632_010 Hb_088542_010--Hb_073212_010 Hb_001677_050 Hb_001677_050 Hb_088542_010--Hb_001677_050 Hb_000605_010 Hb_000605_010 Hb_088542_010--Hb_000605_010 Hb_001377_050 Hb_001377_050 Hb_089140_060--Hb_001377_050 Hb_002929_130 Hb_002929_130 Hb_089140_060--Hb_002929_130 Hb_000815_100 Hb_000815_100 Hb_089140_060--Hb_000815_100 Hb_002035_090 Hb_002035_090 Hb_089140_060--Hb_002035_090 Hb_089140_060--Hb_040506_010 Hb_004007_150 Hb_004007_150 Hb_073212_010--Hb_004007_150 Hb_073212_010--Hb_000605_010 Hb_073212_010--Hb_012384_050 Hb_073212_010--Hb_001691_050 Hb_073212_010--Hb_001632_010 Hb_000186_100 Hb_000186_100 Hb_040506_010--Hb_000186_100 Hb_005470_010 Hb_005470_010 Hb_040506_010--Hb_005470_010 Hb_007382_040 Hb_007382_040 Hb_040506_010--Hb_007382_040 Hb_004307_040 Hb_004307_040 Hb_040506_010--Hb_004307_040 Hb_000895_040 Hb_000895_040 Hb_040506_010--Hb_000895_040 Hb_002493_030 Hb_002493_030 Hb_001691_050--Hb_002493_030 Hb_001691_050--Hb_088542_010 Hb_043655_010 Hb_043655_010 Hb_001691_050--Hb_043655_010 Hb_007634_020 Hb_007634_020 Hb_001691_050--Hb_007634_020 Hb_002232_290 Hb_002232_290 Hb_001691_050--Hb_002232_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.258 1.12921 1.06807 0.188905 3.63759 5.11448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.62757 1.26748 0

CAGE analysis