Hb_001589_070

Information

Type -
Description -
Location Contig1589: 182478-184269
Sequence    

Annotation

kegg
ID egr:104447368
description uncharacterized LOC104447368
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID Q53J91
description Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Oryza sativa subsp. japonica GN=LOC_Os11g22570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001589_070 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_011139_060 0.2521374985 - - -
3 Hb_003772_080 0.252788975 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
4 Hb_020549_010 0.2630598341 - - PREDICTED: uncharacterized protein LOC105638664 isoform X2 [Jatropha curcas]
5 Hb_001673_030 0.2864873499 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
6 Hb_002737_020 0.2892098174 - - metallothionein [Bruguiera gymnorhiza]
7 Hb_001935_190 0.2915975104 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
8 Hb_001276_010 0.2940389227 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
9 Hb_001277_410 0.3001253908 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
10 Hb_001138_010 0.3020246301 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000317_090 0.3026643542 - - hypothetical protein RCOM_1176360 [Ricinus communis]
12 Hb_007508_040 0.3035480895 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
13 Hb_001677_050 0.3041979636 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
14 Hb_101040_010 0.3053048895 - - -
15 Hb_000605_010 0.3054928596 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
16 Hb_023051_010 0.3061073705 - - PREDICTED: putative amidase C869.01 [Populus euphratica]
17 Hb_000574_150 0.3062244303 - - PREDICTED: protein SRG1-like [Jatropha curcas]
18 Hb_000258_360 0.3072919956 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
19 Hb_007978_020 0.308628837 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
20 Hb_054885_010 0.3102234067 - - -

Gene co-expression network

sample Hb_001589_070 Hb_001589_070 Hb_011139_060 Hb_011139_060 Hb_001589_070--Hb_011139_060 Hb_003772_080 Hb_003772_080 Hb_001589_070--Hb_003772_080 Hb_020549_010 Hb_020549_010 Hb_001589_070--Hb_020549_010 Hb_001673_030 Hb_001673_030 Hb_001589_070--Hb_001673_030 Hb_002737_020 Hb_002737_020 Hb_001589_070--Hb_002737_020 Hb_001935_190 Hb_001935_190 Hb_001589_070--Hb_001935_190 Hb_000258_360 Hb_000258_360 Hb_011139_060--Hb_000258_360 Hb_169329_010 Hb_169329_010 Hb_011139_060--Hb_169329_010 Hb_013358_100 Hb_013358_100 Hb_011139_060--Hb_013358_100 Hb_054885_010 Hb_054885_010 Hb_011139_060--Hb_054885_010 Hb_144550_020 Hb_144550_020 Hb_011139_060--Hb_144550_020 Hb_177152_010 Hb_177152_010 Hb_011139_060--Hb_177152_010 Hb_171659_010 Hb_171659_010 Hb_003772_080--Hb_171659_010 Hb_000317_090 Hb_000317_090 Hb_003772_080--Hb_000317_090 Hb_001276_010 Hb_001276_010 Hb_003772_080--Hb_001276_010 Hb_000559_050 Hb_000559_050 Hb_003772_080--Hb_000559_050 Hb_011909_090 Hb_011909_090 Hb_003772_080--Hb_011909_090 Hb_000982_150 Hb_000982_150 Hb_020549_010--Hb_000982_150 Hb_020549_010--Hb_001673_030 Hb_001277_410 Hb_001277_410 Hb_020549_010--Hb_001277_410 Hb_087221_010 Hb_087221_010 Hb_020549_010--Hb_087221_010 Hb_013877_020 Hb_013877_020 Hb_020549_010--Hb_013877_020 Hb_001676_030 Hb_001676_030 Hb_001673_030--Hb_001676_030 Hb_000071_200 Hb_000071_200 Hb_001673_030--Hb_000071_200 Hb_000270_860 Hb_000270_860 Hb_001673_030--Hb_000270_860 Hb_005539_300 Hb_005539_300 Hb_001673_030--Hb_005539_300 Hb_000792_080 Hb_000792_080 Hb_001673_030--Hb_000792_080 Hb_018118_020 Hb_018118_020 Hb_002737_020--Hb_018118_020 Hb_000123_020 Hb_000123_020 Hb_002737_020--Hb_000123_020 Hb_000123_030 Hb_000123_030 Hb_002737_020--Hb_000123_030 Hb_076233_020 Hb_076233_020 Hb_002737_020--Hb_076233_020 Hb_097433_020 Hb_097433_020 Hb_002737_020--Hb_097433_020 Hb_003772_020 Hb_003772_020 Hb_002737_020--Hb_003772_020 Hb_120662_010 Hb_120662_010 Hb_001935_190--Hb_120662_010 Hb_001916_120 Hb_001916_120 Hb_001935_190--Hb_001916_120 Hb_001916_060 Hb_001916_060 Hb_001935_190--Hb_001916_060 Hb_000329_420 Hb_000329_420 Hb_001935_190--Hb_000329_420 Hb_000792_110 Hb_000792_110 Hb_001935_190--Hb_000792_110 Hb_000252_090 Hb_000252_090 Hb_001935_190--Hb_000252_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.392103 0.13217 0.0148467 0.111677 0.0558266 0.258147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis