Hb_171659_010

Information

Type -
Description -
Location Contig171659: 8886-11965
Sequence    

Annotation

kegg
ID bvg:104903214
description uncharacterized LOC104903214
nr
ID XP_010689515.1
description PREDICTED: uncharacterized protein LOC104903214 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID A0A0B0NEU3
description TBC1 domain family member 1 OS=Gossypium arboreum GN=F383_16407 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171659_010 0.0 - - PREDICTED: uncharacterized protein LOC104903214 [Beta vulgaris subsp. vulgaris]
2 Hb_003772_080 0.1513675868 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
3 Hb_022452_010 0.1588110981 - - -
4 Hb_001276_010 0.1664682774 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
5 Hb_000317_090 0.1778566327 - - hypothetical protein RCOM_1176360 [Ricinus communis]
6 Hb_003816_020 0.1782075197 - - hypothetical protein POPTR_0017s05940g [Populus trichocarpa]
7 Hb_004939_020 0.2038312513 - - gag/pol protein [Bryonia dioica]
8 Hb_000176_060 0.255984034 - - unnamed protein product [Vitis vinifera]
9 Hb_000146_060 0.2626238647 - - -
10 Hb_002026_230 0.2647270854 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
11 Hb_000836_050 0.2675707355 - - -
12 Hb_002609_100 0.2696803053 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
13 Hb_003534_040 0.2709358501 - - hypothetical protein POPTR_0009s14420g [Populus trichocarpa]
14 Hb_000559_050 0.2807522053 - - hypothetical protein JCGZ_20429 [Jatropha curcas]
15 Hb_003222_010 0.2833235105 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_003398_010 0.2851219264 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
17 Hb_001951_120 0.2896665922 - - -
18 Hb_012150_070 0.2917350686 - - hypothetical protein JCGZ_04984 [Jatropha curcas]
19 Hb_043655_010 0.291941453 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
20 Hb_002783_050 0.2930095414 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_171659_010 Hb_171659_010 Hb_003772_080 Hb_003772_080 Hb_171659_010--Hb_003772_080 Hb_022452_010 Hb_022452_010 Hb_171659_010--Hb_022452_010 Hb_001276_010 Hb_001276_010 Hb_171659_010--Hb_001276_010 Hb_000317_090 Hb_000317_090 Hb_171659_010--Hb_000317_090 Hb_003816_020 Hb_003816_020 Hb_171659_010--Hb_003816_020 Hb_004939_020 Hb_004939_020 Hb_171659_010--Hb_004939_020 Hb_003772_080--Hb_000317_090 Hb_003772_080--Hb_001276_010 Hb_000559_050 Hb_000559_050 Hb_003772_080--Hb_000559_050 Hb_011909_090 Hb_011909_090 Hb_003772_080--Hb_011909_090 Hb_001589_070 Hb_001589_070 Hb_003772_080--Hb_001589_070 Hb_022452_010--Hb_001276_010 Hb_000176_060 Hb_000176_060 Hb_022452_010--Hb_000176_060 Hb_022452_010--Hb_003816_020 Hb_000205_070 Hb_000205_070 Hb_022452_010--Hb_000205_070 Hb_001951_120 Hb_001951_120 Hb_022452_010--Hb_001951_120 Hb_001276_010--Hb_000317_090 Hb_001276_010--Hb_000176_060 Hb_003222_010 Hb_003222_010 Hb_001276_010--Hb_003222_010 Hb_002837_090 Hb_002837_090 Hb_000317_090--Hb_002837_090 Hb_000317_090--Hb_022452_010 Hb_000317_090--Hb_003816_020 Hb_003816_020--Hb_004939_020 Hb_003816_020--Hb_001276_010 Hb_003816_020--Hb_000205_070 Hb_004939_020--Hb_022452_010 Hb_004939_020--Hb_000205_070 Hb_009189_030 Hb_009189_030 Hb_004939_020--Hb_009189_030 Hb_003337_070 Hb_003337_070 Hb_004939_020--Hb_003337_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.128422 0.0759194 0 0 0.0848923 0.0533734
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis