Hb_003816_020

Information

Type -
Description -
Location Contig3816: 18536-19264
Sequence    

Annotation

kegg
ID pop:POPTR_0017s05940g
description hypothetical protein
nr
ID XP_006372881.1
description hypothetical protein POPTR_0017s05940g [Populus trichocarpa]
swissprot
ID Q9STX2
description 3-oxo-Delta(4,5)-steroid 5-beta-reductase OS=Arabidopsis thaliana GN=VEP1 PE=1 SV=1
trembl
ID U5FHP4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s05940g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38652: 18666-36020
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003816_020 0.0 - - hypothetical protein POPTR_0017s05940g [Populus trichocarpa]
2 Hb_004939_020 0.1328099701 - - gag/pol protein [Bryonia dioica]
3 Hb_022452_010 0.161222565 - - -
4 Hb_171659_010 0.1782075197 - - PREDICTED: uncharacterized protein LOC104903214 [Beta vulgaris subsp. vulgaris]
5 Hb_001276_010 0.1930469201 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
6 Hb_000205_070 0.1962801441 - - kinase, putative [Ricinus communis]
7 Hb_000317_090 0.2086837064 - - hypothetical protein RCOM_1176360 [Ricinus communis]
8 Hb_004631_160 0.2091499425 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
9 Hb_003398_010 0.2094193443 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
10 Hb_000176_060 0.2116170397 - - unnamed protein product [Vitis vinifera]
11 Hb_009189_030 0.219188436 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
12 Hb_003337_070 0.2406148009 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
13 Hb_007978_020 0.24611061 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
14 Hb_041237_010 0.2477868149 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005203_050 0.2482784355 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
16 Hb_003222_010 0.2495368578 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_032018_010 0.2509542705 - - PREDICTED: uncharacterized protein LOC105778873 [Gossypium raimondii]
18 Hb_033926_010 0.2513575742 - - -
19 Hb_000617_040 0.2575883118 - - PREDICTED: uncharacterized protein LOC105647487 isoform X2 [Jatropha curcas]
20 Hb_167316_010 0.2592636815 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 1 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_003816_020 Hb_003816_020 Hb_004939_020 Hb_004939_020 Hb_003816_020--Hb_004939_020 Hb_022452_010 Hb_022452_010 Hb_003816_020--Hb_022452_010 Hb_171659_010 Hb_171659_010 Hb_003816_020--Hb_171659_010 Hb_001276_010 Hb_001276_010 Hb_003816_020--Hb_001276_010 Hb_000205_070 Hb_000205_070 Hb_003816_020--Hb_000205_070 Hb_000317_090 Hb_000317_090 Hb_003816_020--Hb_000317_090 Hb_004939_020--Hb_022452_010 Hb_004939_020--Hb_171659_010 Hb_004939_020--Hb_000205_070 Hb_009189_030 Hb_009189_030 Hb_004939_020--Hb_009189_030 Hb_003337_070 Hb_003337_070 Hb_004939_020--Hb_003337_070 Hb_022452_010--Hb_001276_010 Hb_000176_060 Hb_000176_060 Hb_022452_010--Hb_000176_060 Hb_022452_010--Hb_171659_010 Hb_022452_010--Hb_000205_070 Hb_001951_120 Hb_001951_120 Hb_022452_010--Hb_001951_120 Hb_003772_080 Hb_003772_080 Hb_171659_010--Hb_003772_080 Hb_171659_010--Hb_001276_010 Hb_171659_010--Hb_000317_090 Hb_001276_010--Hb_000317_090 Hb_001276_010--Hb_000176_060 Hb_001276_010--Hb_003772_080 Hb_003222_010 Hb_003222_010 Hb_001276_010--Hb_003222_010 Hb_027255_010 Hb_027255_010 Hb_000205_070--Hb_027255_010 Hb_000205_070--Hb_003337_070 Hb_000205_070--Hb_000176_060 Hb_000205_070--Hb_009189_030 Hb_006745_020 Hb_006745_020 Hb_000205_070--Hb_006745_020 Hb_002837_090 Hb_002837_090 Hb_000317_090--Hb_002837_090 Hb_000317_090--Hb_003772_080 Hb_000317_090--Hb_022452_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.2997 27.1561 0.0516136 0.0290207 26.6254 22.1524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.10779 1.12365 0

CAGE analysis