Hb_003337_070

Information

Type -
Description -
Location Contig3337: 85004-85908
Sequence    

Annotation

kegg
ID rcu:RCOM_1156000
description sigma factor sigb regulation protein rsbq, putative (EC:3.1.1.1)
nr
ID XP_012079584.1
description PREDICTED: probable esterase KAI2 [Jatropha curcas]
swissprot
ID A4VQH7
description Putative aminoacrylate hydrolase RutD OS=Pseudomonas stutzeri (strain A1501) GN=rutD PE=3 SV=1
trembl
ID A0A067KAJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12499 PE=4 SV=1
Gene Ontology
ID GO:0052689
description probable esterase kai2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003337_070 0.0 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
2 Hb_006745_020 0.1356440333 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
3 Hb_000205_070 0.1561298214 - - kinase, putative [Ricinus communis]
4 Hb_003647_120 0.168940692 - - 18.2 kDa class I heat shock family protein [Populus trichocarpa]
5 Hb_001279_230 0.1794476994 - - PREDICTED: class I heat shock protein-like [Jatropha curcas]
6 Hb_009189_030 0.1894861293 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
7 Hb_184326_010 0.1923779314 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
8 Hb_182807_020 0.2028694544 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
9 Hb_000853_290 0.2059147925 - - PREDICTED: uncharacterized protein LOC105642585 [Jatropha curcas]
10 Hb_004631_160 0.2065538924 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
11 Hb_004846_180 0.2227922458 - - heat shock protein, putative [Ricinus communis]
12 Hb_027255_010 0.2289435431 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
13 Hb_011639_010 0.2290008334 - - -
14 Hb_000488_030 0.2312727357 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
15 Hb_001723_110 0.2354799392 - - PREDICTED: solute carrier family 25 member 44-like isoform X2 [Malus domestica]
16 Hb_007044_010 0.2354807936 - - -
17 Hb_004939_020 0.2360690864 - - gag/pol protein [Bryonia dioica]
18 Hb_000398_130 0.2366791255 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
19 Hb_025194_030 0.2378576064 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
20 Hb_003816_020 0.2406148009 - - hypothetical protein POPTR_0017s05940g [Populus trichocarpa]

Gene co-expression network

sample Hb_003337_070 Hb_003337_070 Hb_006745_020 Hb_006745_020 Hb_003337_070--Hb_006745_020 Hb_000205_070 Hb_000205_070 Hb_003337_070--Hb_000205_070 Hb_003647_120 Hb_003647_120 Hb_003337_070--Hb_003647_120 Hb_001279_230 Hb_001279_230 Hb_003337_070--Hb_001279_230 Hb_009189_030 Hb_009189_030 Hb_003337_070--Hb_009189_030 Hb_184326_010 Hb_184326_010 Hb_003337_070--Hb_184326_010 Hb_000853_290 Hb_000853_290 Hb_006745_020--Hb_000853_290 Hb_006745_020--Hb_000205_070 Hb_006745_020--Hb_184326_010 Hb_006745_020--Hb_003647_120 Hb_000398_130 Hb_000398_130 Hb_006745_020--Hb_000398_130 Hb_027255_010 Hb_027255_010 Hb_000205_070--Hb_027255_010 Hb_000176_060 Hb_000176_060 Hb_000205_070--Hb_000176_060 Hb_000205_070--Hb_009189_030 Hb_022452_010 Hb_022452_010 Hb_000205_070--Hb_022452_010 Hb_003647_120--Hb_001279_230 Hb_001723_110 Hb_001723_110 Hb_003647_120--Hb_001723_110 Hb_003647_120--Hb_184326_010 Hb_003647_120--Hb_000398_130 Hb_001104_040 Hb_001104_040 Hb_001279_230--Hb_001104_040 Hb_001279_230--Hb_184326_010 Hb_001279_230--Hb_001723_110 Hb_001279_230--Hb_006745_020 Hb_003222_010 Hb_003222_010 Hb_009189_030--Hb_003222_010 Hb_009189_030--Hb_027255_010 Hb_009189_030--Hb_000853_290 Hb_004631_160 Hb_004631_160 Hb_009189_030--Hb_004631_160 Hb_182807_020 Hb_182807_020 Hb_184326_010--Hb_182807_020 Hb_004846_180 Hb_004846_180 Hb_184326_010--Hb_004846_180 Hb_025194_030 Hb_025194_030 Hb_184326_010--Hb_025194_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.61122 2.1507 0.111946 0.0264804 3.90159 1.73568
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0519455 0 0.126084 0.10444

CAGE analysis