Hb_003647_120

Information

Type -
Description -
Location Contig3647: 117972-118394
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09460g
description POPTRDRAFT_653054; 18.2 kDa class I heat shock family protein
nr
ID XP_002308192.2
description 18.2 kDa class I heat shock family protein [Populus trichocarpa]
swissprot
ID P13853
description 17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2
trembl
ID B9HC70
description 18.2 kDa class I heat shock family protein OS=Populus trichocarpa GN=POPTR_0006s09460g PE=3 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003647_120 0.0 - - 18.2 kDa class I heat shock family protein [Populus trichocarpa]
2 Hb_001279_230 0.1333330367 - - PREDICTED: class I heat shock protein-like [Jatropha curcas]
3 Hb_001723_110 0.1533224179 - - PREDICTED: solute carrier family 25 member 44-like isoform X2 [Malus domestica]
4 Hb_184326_010 0.1663559203 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
5 Hb_003337_070 0.168940692 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
6 Hb_006745_020 0.1788059414 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
7 Hb_000398_130 0.1792959684 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
8 Hb_001104_040 0.1850915494 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
9 Hb_004846_180 0.1873095839 - - heat shock protein, putative [Ricinus communis]
10 Hb_182807_020 0.1892162357 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
11 Hb_000205_070 0.1952982379 - - kinase, putative [Ricinus communis]
12 Hb_025194_030 0.2181772163 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
13 Hb_027255_010 0.2187378419 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
14 Hb_000853_290 0.2362808862 - - PREDICTED: uncharacterized protein LOC105642585 [Jatropha curcas]
15 Hb_000488_030 0.2427522518 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
16 Hb_048207_010 0.2480882387 - - heat-shock protein, putative [Ricinus communis]
17 Hb_000206_130 0.2513432977 - - unnamed protein product [Vitis vinifera]
18 Hb_000796_060 0.2522322809 - - Glycogenin-2 [Aegilops tauschii]
19 Hb_001269_560 0.2563607449 - - heat-shock protein 70 [Hevea brasiliensis]
20 Hb_007382_020 0.2565097119 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_003647_120 Hb_003647_120 Hb_001279_230 Hb_001279_230 Hb_003647_120--Hb_001279_230 Hb_001723_110 Hb_001723_110 Hb_003647_120--Hb_001723_110 Hb_184326_010 Hb_184326_010 Hb_003647_120--Hb_184326_010 Hb_003337_070 Hb_003337_070 Hb_003647_120--Hb_003337_070 Hb_006745_020 Hb_006745_020 Hb_003647_120--Hb_006745_020 Hb_000398_130 Hb_000398_130 Hb_003647_120--Hb_000398_130 Hb_001104_040 Hb_001104_040 Hb_001279_230--Hb_001104_040 Hb_001279_230--Hb_003337_070 Hb_001279_230--Hb_184326_010 Hb_001279_230--Hb_001723_110 Hb_001279_230--Hb_006745_020 Hb_003992_260 Hb_003992_260 Hb_001723_110--Hb_003992_260 Hb_004846_180 Hb_004846_180 Hb_001723_110--Hb_004846_180 Hb_027255_010 Hb_027255_010 Hb_001723_110--Hb_027255_010 Hb_001723_110--Hb_000398_130 Hb_182807_020 Hb_182807_020 Hb_184326_010--Hb_182807_020 Hb_184326_010--Hb_004846_180 Hb_025194_030 Hb_025194_030 Hb_184326_010--Hb_025194_030 Hb_184326_010--Hb_006745_020 Hb_184326_010--Hb_003337_070 Hb_003337_070--Hb_006745_020 Hb_000205_070 Hb_000205_070 Hb_003337_070--Hb_000205_070 Hb_009189_030 Hb_009189_030 Hb_003337_070--Hb_009189_030 Hb_000853_290 Hb_000853_290 Hb_006745_020--Hb_000853_290 Hb_006745_020--Hb_000205_070 Hb_006745_020--Hb_000398_130 Hb_000488_030 Hb_000488_030 Hb_000398_130--Hb_000488_030 Hb_005730_100 Hb_005730_100 Hb_000398_130--Hb_005730_100 Hb_000398_130--Hb_001279_230 Hb_000398_130--Hb_027255_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
107.207 903.543 2.35614 11.7391 2354.38 892.961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6614 9.15944 58.4696 39.1614 13.8689

CAGE analysis