Hb_001279_230

Information

Type -
Description -
Location Contig1279: 217404-217814
Sequence    

Annotation

kegg
ID cic:CICLE_v10017121mg
description hypothetical protein
nr
ID XP_012071478.1
description PREDICTED: class I heat shock protein-like [Jatropha curcas]
swissprot
ID P27879
description 18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1
trembl
ID A0A067LNE2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10205 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 015_A19.ab1: 217205-217875

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_230 0.0 - - PREDICTED: class I heat shock protein-like [Jatropha curcas]
2 Hb_003647_120 0.1333330367 - - 18.2 kDa class I heat shock family protein [Populus trichocarpa]
3 Hb_001104_040 0.1527172361 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
4 Hb_003337_070 0.1794476994 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
5 Hb_184326_010 0.1957389624 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
6 Hb_001723_110 0.2079579551 - - PREDICTED: solute carrier family 25 member 44-like isoform X2 [Malus domestica]
7 Hb_006745_020 0.21436748 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
8 Hb_053643_010 0.2169806202 - - Zinc finger protein GIS2 [Medicago truncatula]
9 Hb_000205_070 0.2189508531 - - kinase, putative [Ricinus communis]
10 Hb_000398_130 0.2196966699 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
11 Hb_027255_010 0.2258751272 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
12 Hb_048207_010 0.2290695037 - - heat-shock protein, putative [Ricinus communis]
13 Hb_000488_030 0.2353188412 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
14 Hb_000796_060 0.235398727 - - Glycogenin-2 [Aegilops tauschii]
15 Hb_009922_010 0.237596331 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
16 Hb_002928_070 0.2418705659 - - -
17 Hb_182807_020 0.2469474935 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
18 Hb_009189_030 0.2478064631 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
19 Hb_004846_180 0.2497446601 - - heat shock protein, putative [Ricinus communis]
20 Hb_093432_020 0.2573748951 - - PREDICTED: QWRF motif-containing protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001279_230 Hb_001279_230 Hb_003647_120 Hb_003647_120 Hb_001279_230--Hb_003647_120 Hb_001104_040 Hb_001104_040 Hb_001279_230--Hb_001104_040 Hb_003337_070 Hb_003337_070 Hb_001279_230--Hb_003337_070 Hb_184326_010 Hb_184326_010 Hb_001279_230--Hb_184326_010 Hb_001723_110 Hb_001723_110 Hb_001279_230--Hb_001723_110 Hb_006745_020 Hb_006745_020 Hb_001279_230--Hb_006745_020 Hb_003647_120--Hb_001723_110 Hb_003647_120--Hb_184326_010 Hb_003647_120--Hb_003337_070 Hb_003647_120--Hb_006745_020 Hb_000398_130 Hb_000398_130 Hb_003647_120--Hb_000398_130 Hb_004529_020 Hb_004529_020 Hb_001104_040--Hb_004529_020 Hb_116436_010 Hb_116436_010 Hb_001104_040--Hb_116436_010 Hb_001104_040--Hb_003647_120 Hb_092043_020 Hb_092043_020 Hb_001104_040--Hb_092043_020 Hb_048207_010 Hb_048207_010 Hb_001104_040--Hb_048207_010 Hb_003337_070--Hb_006745_020 Hb_000205_070 Hb_000205_070 Hb_003337_070--Hb_000205_070 Hb_009189_030 Hb_009189_030 Hb_003337_070--Hb_009189_030 Hb_003337_070--Hb_184326_010 Hb_182807_020 Hb_182807_020 Hb_184326_010--Hb_182807_020 Hb_004846_180 Hb_004846_180 Hb_184326_010--Hb_004846_180 Hb_025194_030 Hb_025194_030 Hb_184326_010--Hb_025194_030 Hb_184326_010--Hb_006745_020 Hb_003992_260 Hb_003992_260 Hb_001723_110--Hb_003992_260 Hb_001723_110--Hb_004846_180 Hb_027255_010 Hb_027255_010 Hb_001723_110--Hb_027255_010 Hb_001723_110--Hb_000398_130 Hb_000853_290 Hb_000853_290 Hb_006745_020--Hb_000853_290 Hb_006745_020--Hb_000205_070 Hb_006745_020--Hb_000398_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.6596 478.59 0.91008 4.70988 949.553 310.295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.239897 0 0.527269

CAGE analysis