Hb_005730_100

Information

Type -
Description -
Location Contig5730: 111885-112367
Sequence    

Annotation

kegg
ID cmo:103502478
description 17.8 kDa class I heat shock protein-like
nr
ID XP_012448288.1
description PREDICTED: 18.2 kDa class I heat shock protein-like [Gossypium raimondii]
swissprot
ID P27880
description 18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1
trembl
ID A0A0D2QCN9
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G099900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005730_100 0.0 - - PREDICTED: 18.2 kDa class I heat shock protein-like [Gossypium raimondii]
2 Hb_002890_190 0.1114687766 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
3 Hb_000891_080 0.1447605033 - - PREDICTED: TMV resistance protein N-like, partial [Populus euphratica]
4 Hb_029980_010 0.1579480864 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
5 Hb_000488_030 0.1948911195 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
6 Hb_001104_040 0.2022237485 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
7 Hb_000398_130 0.207503787 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
8 Hb_168893_010 0.2157502941 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
9 Hb_000796_060 0.2201165794 - - Glycogenin-2 [Aegilops tauschii]
10 Hb_029508_010 0.2348876006 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
11 Hb_116436_010 0.2378669514 - - PREDICTED: uncharacterized protein LOC105766967 [Gossypium raimondii]
12 Hb_006745_020 0.2435620277 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
13 Hb_025194_030 0.2444159528 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
14 Hb_048207_010 0.2446346136 - - heat-shock protein, putative [Ricinus communis]
15 Hb_007382_020 0.2477066668 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
16 Hb_004529_020 0.2657508736 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
17 Hb_092043_020 0.2681140137 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
18 Hb_000046_220 0.2715974802 - - -
19 Hb_003647_120 0.2750392293 - - 18.2 kDa class I heat shock family protein [Populus trichocarpa]
20 Hb_000345_120 0.2750586739 - - PREDICTED: mediator of RNA polymerase II transcription subunit 37a [Jatropha curcas]

Gene co-expression network

sample Hb_005730_100 Hb_005730_100 Hb_002890_190 Hb_002890_190 Hb_005730_100--Hb_002890_190 Hb_000891_080 Hb_000891_080 Hb_005730_100--Hb_000891_080 Hb_029980_010 Hb_029980_010 Hb_005730_100--Hb_029980_010 Hb_000488_030 Hb_000488_030 Hb_005730_100--Hb_000488_030 Hb_001104_040 Hb_001104_040 Hb_005730_100--Hb_001104_040 Hb_000398_130 Hb_000398_130 Hb_005730_100--Hb_000398_130 Hb_002890_190--Hb_000891_080 Hb_116436_010 Hb_116436_010 Hb_002890_190--Hb_116436_010 Hb_002890_190--Hb_029980_010 Hb_007382_020 Hb_007382_020 Hb_002890_190--Hb_007382_020 Hb_000107_130 Hb_000107_130 Hb_002890_190--Hb_000107_130 Hb_000891_080--Hb_116436_010 Hb_000891_080--Hb_001104_040 Hb_000891_080--Hb_029980_010 Hb_092043_020 Hb_092043_020 Hb_000891_080--Hb_092043_020 Hb_000046_220 Hb_000046_220 Hb_029980_010--Hb_000046_220 Hb_168893_010 Hb_168893_010 Hb_029980_010--Hb_168893_010 Hb_029980_010--Hb_000488_030 Hb_006745_020 Hb_006745_020 Hb_000488_030--Hb_006745_020 Hb_079297_010 Hb_079297_010 Hb_000488_030--Hb_079297_010 Hb_000488_030--Hb_000046_220 Hb_000488_030--Hb_000398_130 Hb_001279_230 Hb_001279_230 Hb_001104_040--Hb_001279_230 Hb_004529_020 Hb_004529_020 Hb_001104_040--Hb_004529_020 Hb_001104_040--Hb_116436_010 Hb_003647_120 Hb_003647_120 Hb_001104_040--Hb_003647_120 Hb_001104_040--Hb_092043_020 Hb_048207_010 Hb_048207_010 Hb_001104_040--Hb_048207_010 Hb_000398_130--Hb_006745_020 Hb_000398_130--Hb_003647_120 Hb_000398_130--Hb_001279_230 Hb_027255_010 Hb_027255_010 Hb_000398_130--Hb_027255_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
124.427 877.842 56.1977 165.868 5153.68 585.835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.426435 0.669982 1.5023 2.09603 367.596

CAGE analysis