Hb_079297_010

Information

Type -
Description -
Location Contig79297: 387-2692
Sequence    

Annotation

kegg
ID sot:102581415
description putative receptor protein kinase ZmPK1-like
nr
ID CAN81700.1
description hypothetical protein VITISV_012409 [Vitis vinifera]
swissprot
ID Q39203
description G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 OS=Arabidopsis thaliana GN=SD22 PE=1 SV=1
trembl
ID F6GZX6
description Serine/threonine-protein kinase OS=Vitis vinifera GN=VIT_18s0001g09800 PE=3 SV=1
Gene Ontology
ID GO:0005488
description receptor protein kinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079297_010 0.0 - - hypothetical protein VITISV_012409 [Vitis vinifera]
2 Hb_000488_030 0.2029294884 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
3 Hb_125948_020 0.219389054 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
4 Hb_004846_170 0.224998067 - - heat-shock protein 70 [Hevea brasiliensis]
5 Hb_000046_220 0.2305911831 - - -
6 Hb_001269_560 0.2641477281 - - heat-shock protein 70 [Hevea brasiliensis]
7 Hb_049827_010 0.265741472 - - PREDICTED: uncharacterized protein LOC105762110 [Gossypium raimondii]
8 Hb_003392_010 0.2657539403 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
9 Hb_006387_010 0.2657688371 - - PREDICTED: uncharacterized protein LOC105649124 [Jatropha curcas]
10 Hb_001863_210 0.2660142336 - - -
11 Hb_185830_100 0.2660839768 - - -
12 Hb_002708_010 0.2661705079 - - -
13 Hb_002843_220 0.26644388 - - PREDICTED: small heat shock protein, chloroplastic [Jatropha curcas]
14 Hb_102355_010 0.2680683971 - - PREDICTED: uncharacterized protein LOC104094591, partial [Nicotiana tomentosiformis]
15 Hb_086484_010 0.2686269599 - - PREDICTED: uncharacterized protein LOC101259761 [Solanum lycopersicum]
16 Hb_003637_030 0.2722222974 - - -
17 Hb_007943_010 0.2788442917 - - -
18 Hb_000684_340 0.2822934607 - - PREDICTED: L-ascorbate peroxidase 2, cytosolic [Pyrus x bretschneideri]
19 Hb_001279_230 0.2926104214 - - PREDICTED: class I heat shock protein-like [Jatropha curcas]
20 Hb_012264_040 0.3015093566 - - -

Gene co-expression network

sample Hb_079297_010 Hb_079297_010 Hb_000488_030 Hb_000488_030 Hb_079297_010--Hb_000488_030 Hb_125948_020 Hb_125948_020 Hb_079297_010--Hb_125948_020 Hb_004846_170 Hb_004846_170 Hb_079297_010--Hb_004846_170 Hb_000046_220 Hb_000046_220 Hb_079297_010--Hb_000046_220 Hb_001269_560 Hb_001269_560 Hb_079297_010--Hb_001269_560 Hb_049827_010 Hb_049827_010 Hb_079297_010--Hb_049827_010 Hb_006745_020 Hb_006745_020 Hb_000488_030--Hb_006745_020 Hb_005730_100 Hb_005730_100 Hb_000488_030--Hb_005730_100 Hb_000488_030--Hb_000046_220 Hb_000398_130 Hb_000398_130 Hb_000488_030--Hb_000398_130 Hb_029980_010 Hb_029980_010 Hb_000488_030--Hb_029980_010 Hb_023528_010 Hb_023528_010 Hb_125948_020--Hb_023528_010 Hb_007943_010 Hb_007943_010 Hb_125948_020--Hb_007943_010 Hb_004529_020 Hb_004529_020 Hb_125948_020--Hb_004529_020 Hb_003392_010 Hb_003392_010 Hb_125948_020--Hb_003392_010 Hb_125948_020--Hb_049827_010 Hb_125948_020--Hb_004846_170 Hb_000684_340 Hb_000684_340 Hb_004846_170--Hb_000684_340 Hb_004846_170--Hb_001269_560 Hb_003637_030 Hb_003637_030 Hb_004846_170--Hb_003637_030 Hb_086484_010 Hb_086484_010 Hb_004846_170--Hb_086484_010 Hb_000046_220--Hb_029980_010 Hb_000046_220--Hb_005730_100 Hb_000891_080 Hb_000891_080 Hb_000046_220--Hb_000891_080 Hb_002843_220 Hb_002843_220 Hb_000046_220--Hb_002843_220 Hb_000140_370 Hb_000140_370 Hb_001269_560--Hb_000140_370 Hb_001269_560--Hb_000684_340 Hb_001269_560--Hb_125948_020 Hb_004846_180 Hb_004846_180 Hb_001269_560--Hb_004846_180 Hb_003647_120 Hb_003647_120 Hb_001269_560--Hb_003647_120 Hb_049827_010--Hb_003392_010 Hb_006387_010 Hb_006387_010 Hb_049827_010--Hb_006387_010 Hb_001863_210 Hb_001863_210 Hb_049827_010--Hb_001863_210 Hb_185830_100 Hb_185830_100 Hb_049827_010--Hb_185830_100 Hb_002708_010 Hb_002708_010 Hb_049827_010--Hb_002708_010 Hb_102355_010 Hb_102355_010 Hb_049827_010--Hb_102355_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.186282 0 0 0.222254 0.0259703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0373867

CAGE analysis