Hb_086484_010

Information

Type -
Description -
Location Contig86484: 12-710
Sequence    

Annotation

kegg
ID sly:101259761
description uncharacterized LOC101259761
nr
ID XP_004243137.1
description PREDICTED: uncharacterized protein LOC101259761 [Solanum lycopersicum]
swissprot
ID -
description -
trembl
ID Q75I18
description Putative retrotransposon polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBb0031F05.9 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086484_010 0.0 - - PREDICTED: uncharacterized protein LOC101259761 [Solanum lycopersicum]
2 Hb_102355_010 0.0041784762 - - PREDICTED: uncharacterized protein LOC104094591, partial [Nicotiana tomentosiformis]
3 Hb_003637_030 0.0205484253 - - -
4 Hb_002708_010 0.0250840858 - - -
5 Hb_185830_100 0.026754851 - - -
6 Hb_001863_210 0.0282623482 - - -
7 Hb_006387_010 0.0367905406 - - PREDICTED: uncharacterized protein LOC105649124 [Jatropha curcas]
8 Hb_049827_010 0.04039365 - - PREDICTED: uncharacterized protein LOC105762110 [Gossypium raimondii]
9 Hb_003392_010 0.0434609346 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
10 Hb_012264_040 0.1072664542 - - -
11 Hb_135941_010 0.1189616316 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
12 Hb_133862_010 0.1223052131 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
13 Hb_007943_010 0.1282457088 - - -
14 Hb_001066_020 0.1380469626 - - PREDICTED: uncharacterized protein LOC104908874, partial [Beta vulgaris subsp. vulgaris]
15 Hb_005432_050 0.1604908146 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
16 Hb_008424_010 0.1938582101 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_000016_010 0.1951325032 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
18 Hb_038190_040 0.2084065696 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
19 Hb_125948_020 0.2109357658 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
20 Hb_004846_170 0.227637609 - - heat-shock protein 70 [Hevea brasiliensis]

Gene co-expression network

sample Hb_086484_010 Hb_086484_010 Hb_102355_010 Hb_102355_010 Hb_086484_010--Hb_102355_010 Hb_003637_030 Hb_003637_030 Hb_086484_010--Hb_003637_030 Hb_002708_010 Hb_002708_010 Hb_086484_010--Hb_002708_010 Hb_185830_100 Hb_185830_100 Hb_086484_010--Hb_185830_100 Hb_001863_210 Hb_001863_210 Hb_086484_010--Hb_001863_210 Hb_006387_010 Hb_006387_010 Hb_086484_010--Hb_006387_010 Hb_102355_010--Hb_002708_010 Hb_102355_010--Hb_185830_100 Hb_102355_010--Hb_001863_210 Hb_102355_010--Hb_003637_030 Hb_102355_010--Hb_006387_010 Hb_003637_030--Hb_002708_010 Hb_003637_030--Hb_185830_100 Hb_003637_030--Hb_001863_210 Hb_003637_030--Hb_006387_010 Hb_002708_010--Hb_185830_100 Hb_002708_010--Hb_001863_210 Hb_002708_010--Hb_006387_010 Hb_049827_010 Hb_049827_010 Hb_002708_010--Hb_049827_010 Hb_003392_010 Hb_003392_010 Hb_002708_010--Hb_003392_010 Hb_185830_100--Hb_001863_210 Hb_185830_100--Hb_006387_010 Hb_185830_100--Hb_049827_010 Hb_185830_100--Hb_003392_010 Hb_001863_210--Hb_006387_010 Hb_001863_210--Hb_049827_010 Hb_001863_210--Hb_003392_010 Hb_006387_010--Hb_049827_010 Hb_006387_010--Hb_003392_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0432005 0 0 0.0425278 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis