Hb_000684_340

Information

Type -
Description -
Location Contig684: 344090-346339
Sequence    

Annotation

kegg
ID pxb:103934327
description L-ascorbate peroxidase 2, cytosolic
nr
ID XP_009342360.1
description PREDICTED: L-ascorbate peroxidase 2, cytosolic [Pyrus x bretschneideri]
swissprot
ID Q1PER6
description L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis thaliana GN=APX2 PE=2 SV=3
trembl
ID A9UFX7
description Cytosolic ascorbate peroxidase OS=Vitis vinifera GN=APX PE=2 SV=1
Gene Ontology
ID GO:0005829
description l-ascorbate peroxidase cytosolic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54013: 344091-346333
cDNA
(Sanger)
(ID:Location)		 048_G08.ab1: 344320-346333

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_340 0.0 - - PREDICTED: L-ascorbate peroxidase 2, cytosolic [Pyrus x bretschneideri]
2 Hb_004846_170 0.1318915708 - - heat-shock protein 70 [Hevea brasiliensis]
3 Hb_008064_010 0.2046420487 - - PREDICTED: ubiquitin-like domain-containing CTD phosphatase 1 [Jatropha curcas]
4 Hb_001269_560 0.2061451728 - - heat-shock protein 70 [Hevea brasiliensis]
5 Hb_033623_010 0.2228365879 - - -
6 Hb_002928_070 0.2445149566 - - -
7 Hb_144951_010 0.25061851 - - putative reverse transcriptase [Oryza sativa Japonica Group]
8 Hb_093432_020 0.2577545177 - - PREDICTED: QWRF motif-containing protein 3 [Jatropha curcas]
9 Hb_004939_020 0.2586227477 - - gag/pol protein [Bryonia dioica]
10 Hb_001279_230 0.2604296715 - - PREDICTED: class I heat shock protein-like [Jatropha curcas]
11 Hb_004108_010 0.2679948528 - - -
12 Hb_003337_070 0.268447519 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
13 Hb_000181_440 0.2711398911 - - -
14 Hb_012264_040 0.2758330774 - - -
15 Hb_135941_010 0.2767262965 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
16 Hb_133862_010 0.2770659444 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
17 Hb_001066_020 0.2791642847 - - PREDICTED: uncharacterized protein LOC104908874, partial [Beta vulgaris subsp. vulgaris]
18 Hb_050495_010 0.2809045816 - - heat-shock protein, putative [Ricinus communis]
19 Hb_079297_010 0.2822934607 - - hypothetical protein VITISV_012409 [Vitis vinifera]
20 Hb_003637_030 0.2834291281 - - -

Gene co-expression network

sample Hb_000684_340 Hb_000684_340 Hb_004846_170 Hb_004846_170 Hb_000684_340--Hb_004846_170 Hb_008064_010 Hb_008064_010 Hb_000684_340--Hb_008064_010 Hb_001269_560 Hb_001269_560 Hb_000684_340--Hb_001269_560 Hb_033623_010 Hb_033623_010 Hb_000684_340--Hb_033623_010 Hb_002928_070 Hb_002928_070 Hb_000684_340--Hb_002928_070 Hb_144951_010 Hb_144951_010 Hb_000684_340--Hb_144951_010 Hb_004846_170--Hb_001269_560 Hb_125948_020 Hb_125948_020 Hb_004846_170--Hb_125948_020 Hb_079297_010 Hb_079297_010 Hb_004846_170--Hb_079297_010 Hb_003637_030 Hb_003637_030 Hb_004846_170--Hb_003637_030 Hb_086484_010 Hb_086484_010 Hb_004846_170--Hb_086484_010 Hb_008064_010--Hb_033623_010 Hb_006816_510 Hb_006816_510 Hb_008064_010--Hb_006816_510 Hb_154471_010 Hb_154471_010 Hb_008064_010--Hb_154471_010 Hb_143863_010 Hb_143863_010 Hb_008064_010--Hb_143863_010 Hb_001565_120 Hb_001565_120 Hb_008064_010--Hb_001565_120 Hb_000140_370 Hb_000140_370 Hb_001269_560--Hb_000140_370 Hb_001269_560--Hb_125948_020 Hb_004846_180 Hb_004846_180 Hb_001269_560--Hb_004846_180 Hb_003647_120 Hb_003647_120 Hb_001269_560--Hb_003647_120 Hb_004108_010 Hb_004108_010 Hb_033623_010--Hb_004108_010 Hb_041177_010 Hb_041177_010 Hb_033623_010--Hb_041177_010 Hb_189237_010 Hb_189237_010 Hb_033623_010--Hb_189237_010 Hb_033623_010--Hb_144951_010 Hb_001081_040 Hb_001081_040 Hb_033623_010--Hb_001081_040 Hb_093432_020 Hb_093432_020 Hb_002928_070--Hb_093432_020 Hb_009922_010 Hb_009922_010 Hb_002928_070--Hb_009922_010 Hb_053643_010 Hb_053643_010 Hb_002928_070--Hb_053643_010 Hb_002928_070--Hb_004108_010 Hb_061365_010 Hb_061365_010 Hb_002928_070--Hb_061365_010 Hb_001279_230 Hb_001279_230 Hb_002928_070--Hb_001279_230 Hb_144951_010--Hb_189237_010 Hb_005389_010 Hb_005389_010 Hb_144951_010--Hb_005389_010 Hb_144951_010--Hb_004108_010 Hb_050495_010 Hb_050495_010 Hb_144951_010--Hb_050495_010 Hb_000359_110 Hb_000359_110 Hb_144951_010--Hb_000359_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.5582 855.856 9.07745 13.428 548.055 131.977
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.11058 0.0869645 0.557559 13.5759 4.07052

CAGE analysis