Hb_000359_110

Information

Type transcription factor
Description TF Family: NAC
Location Contig359: 136730-137857
Sequence    

Annotation

kegg
ID tcc:TCM_001955
description NAC domain-containing protein 42
nr
ID XP_007048954.1
description NAC domain-containing protein 42 [Theobroma cacao]
swissprot
ID Q9SK55
description Transcription factor JUNGBRUNNEN 1 OS=Arabidopsis thaliana GN=JUB1 PE=1 SV=1
trembl
ID A0A061DM21
description NAC domain-containing protein 42 OS=Theobroma cacao GN=TCM_001955 PE=4 SV=1
Gene Ontology
ID GO:0003677
description nac domain-containing protein 42

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_110 0.0 transcription factor TF Family: NAC NAC domain-containing protein 42 [Theobroma cacao]
2 Hb_154471_010 0.2277206447 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
3 Hb_144951_010 0.2289874702 - - putative reverse transcriptase [Oryza sativa Japonica Group]
4 Hb_005389_010 0.2481119392 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
5 Hb_001514_040 0.2505122886 - - l-asparaginase, putative [Ricinus communis]
6 Hb_001922_160 0.2626302257 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
7 Hb_000184_080 0.2640508257 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
8 Hb_011885_010 0.2649996471 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
9 Hb_189237_010 0.2653041152 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_000009_260 0.2741825496 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
11 Hb_002411_140 0.2745190303 - - PREDICTED: cytosolic sulfotransferase 15-like [Jatropha curcas]
12 Hb_000488_020 0.2747348831 - - PREDICTED: UDP-glucose iridoid glucosyltransferase-like [Jatropha curcas]
13 Hb_003142_100 0.2753469508 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Eucalyptus grandis]
14 Hb_000014_140 0.2782659965 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
15 Hb_151671_010 0.2786099245 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
16 Hb_004041_070 0.2788394772 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004800_190 0.2825920938 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
18 Hb_002387_080 0.2838285611 - - hypothetical protein JCGZ_25275 [Jatropha curcas]
19 Hb_008246_090 0.2840777048 - - -
20 Hb_138575_010 0.2849516577 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]

Gene co-expression network

sample Hb_000359_110 Hb_000359_110 Hb_154471_010 Hb_154471_010 Hb_000359_110--Hb_154471_010 Hb_144951_010 Hb_144951_010 Hb_000359_110--Hb_144951_010 Hb_005389_010 Hb_005389_010 Hb_000359_110--Hb_005389_010 Hb_001514_040 Hb_001514_040 Hb_000359_110--Hb_001514_040 Hb_001922_160 Hb_001922_160 Hb_000359_110--Hb_001922_160 Hb_000184_080 Hb_000184_080 Hb_000359_110--Hb_000184_080 Hb_003849_260 Hb_003849_260 Hb_154471_010--Hb_003849_260 Hb_005656_140 Hb_005656_140 Hb_154471_010--Hb_005656_140 Hb_131956_010 Hb_131956_010 Hb_154471_010--Hb_131956_010 Hb_001584_220 Hb_001584_220 Hb_154471_010--Hb_001584_220 Hb_004800_190 Hb_004800_190 Hb_154471_010--Hb_004800_190 Hb_189237_010 Hb_189237_010 Hb_144951_010--Hb_189237_010 Hb_144951_010--Hb_005389_010 Hb_004108_010 Hb_004108_010 Hb_144951_010--Hb_004108_010 Hb_033623_010 Hb_033623_010 Hb_144951_010--Hb_033623_010 Hb_050495_010 Hb_050495_010 Hb_144951_010--Hb_050495_010 Hb_005389_010--Hb_189237_010 Hb_005389_010--Hb_004108_010 Hb_000014_140 Hb_000014_140 Hb_005389_010--Hb_000014_140 Hb_084611_010 Hb_084611_010 Hb_005389_010--Hb_084611_010 Hb_005389_010--Hb_033623_010 Hb_001514_040--Hb_001922_160 Hb_002760_060 Hb_002760_060 Hb_001514_040--Hb_002760_060 Hb_003442_050 Hb_003442_050 Hb_001514_040--Hb_003442_050 Hb_013057_030 Hb_013057_030 Hb_001514_040--Hb_013057_030 Hb_048653_040 Hb_048653_040 Hb_001514_040--Hb_048653_040 Hb_033153_010 Hb_033153_010 Hb_001514_040--Hb_033153_010 Hb_001922_160--Hb_002760_060 Hb_003893_020 Hb_003893_020 Hb_001922_160--Hb_003893_020 Hb_001922_160--Hb_003442_050 Hb_001922_160--Hb_013057_030 Hb_001277_150 Hb_001277_150 Hb_001922_160--Hb_001277_150 Hb_000438_040 Hb_000438_040 Hb_000184_080--Hb_000438_040 Hb_004041_070 Hb_004041_070 Hb_000184_080--Hb_004041_070 Hb_136850_040 Hb_136850_040 Hb_000184_080--Hb_136850_040 Hb_000389_250 Hb_000389_250 Hb_000184_080--Hb_000389_250 Hb_000111_220 Hb_000111_220 Hb_000184_080--Hb_000111_220 Hb_003793_020 Hb_003793_020 Hb_000184_080--Hb_003793_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.92368 0.100332 0.0468256 0.395045 0.181837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0599318 0.0471296 0 0.228248 0

CAGE analysis