Hb_004108_010

Information

Type -
Description -
Location Contig4108: 395-2110
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004108_010 0.0 - - -
2 Hb_033623_010 0.1119891217 - - -
3 Hb_189237_010 0.1313778973 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_144951_010 0.1576530022 - - putative reverse transcriptase [Oryza sativa Japonica Group]
5 Hb_005389_010 0.1936041001 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
6 Hb_093432_020 0.1986184387 - - PREDICTED: QWRF motif-containing protein 3 [Jatropha curcas]
7 Hb_002928_070 0.2024613865 - - -
8 Hb_041177_010 0.2108898374 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
9 Hb_050495_010 0.2394855447 - - heat-shock protein, putative [Ricinus communis]
10 Hb_009922_010 0.2504968911 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
11 Hb_000684_340 0.2679948528 - - PREDICTED: L-ascorbate peroxidase 2, cytosolic [Pyrus x bretschneideri]
12 Hb_001081_040 0.2787725942 - - hypothetical protein MIMGU_mgv11b021166mg, partial [Erythranthe guttata]
13 Hb_000336_300 0.2809172669 - - -
14 Hb_000994_010 0.2817608501 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
15 Hb_007292_030 0.2874965198 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000380_070 0.2879200927 - - conserved hypothetical protein [Ricinus communis]
17 Hb_172864_010 0.2907955019 - - PREDICTED: 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase-like [Jatropha curcas]
18 Hb_003849_230 0.2917517849 - - PREDICTED: NEP1-interacting protein 2-like [Jatropha curcas]
19 Hb_000575_130 0.2918687891 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Populus euphratica]
20 Hb_000563_450 0.2922832556 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]

Gene co-expression network

sample Hb_004108_010 Hb_004108_010 Hb_033623_010 Hb_033623_010 Hb_004108_010--Hb_033623_010 Hb_189237_010 Hb_189237_010 Hb_004108_010--Hb_189237_010 Hb_144951_010 Hb_144951_010 Hb_004108_010--Hb_144951_010 Hb_005389_010 Hb_005389_010 Hb_004108_010--Hb_005389_010 Hb_093432_020 Hb_093432_020 Hb_004108_010--Hb_093432_020 Hb_002928_070 Hb_002928_070 Hb_004108_010--Hb_002928_070 Hb_041177_010 Hb_041177_010 Hb_033623_010--Hb_041177_010 Hb_033623_010--Hb_189237_010 Hb_033623_010--Hb_144951_010 Hb_000684_340 Hb_000684_340 Hb_033623_010--Hb_000684_340 Hb_001081_040 Hb_001081_040 Hb_033623_010--Hb_001081_040 Hb_189237_010--Hb_005389_010 Hb_189237_010--Hb_144951_010 Hb_189237_010--Hb_041177_010 Hb_050495_010 Hb_050495_010 Hb_189237_010--Hb_050495_010 Hb_144951_010--Hb_005389_010 Hb_144951_010--Hb_050495_010 Hb_000359_110 Hb_000359_110 Hb_144951_010--Hb_000359_110 Hb_000014_140 Hb_000014_140 Hb_005389_010--Hb_000014_140 Hb_084611_010 Hb_084611_010 Hb_005389_010--Hb_084611_010 Hb_005389_010--Hb_033623_010 Hb_093432_020--Hb_002928_070 Hb_009922_010 Hb_009922_010 Hb_093432_020--Hb_009922_010 Hb_053643_010 Hb_053643_010 Hb_093432_020--Hb_053643_010 Hb_061365_010 Hb_061365_010 Hb_093432_020--Hb_061365_010 Hb_137515_010 Hb_137515_010 Hb_093432_020--Hb_137515_010 Hb_002928_070--Hb_009922_010 Hb_002928_070--Hb_053643_010 Hb_002928_070--Hb_061365_010 Hb_001279_230 Hb_001279_230 Hb_002928_070--Hb_001279_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.137116 0 0 0.0306109 0.0288996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis