Hb_189237_010

Information

Type -
Description -
Location Contig189237: 394-4791
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_189237_010 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_005389_010 0.0776105496 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
3 Hb_144951_010 0.1250072969 - - putative reverse transcriptase [Oryza sativa Japonica Group]
4 Hb_004108_010 0.1313778973 - - -
5 Hb_033623_010 0.1772050877 - - -
6 Hb_041177_010 0.2167377649 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
7 Hb_050495_010 0.222144745 - - heat-shock protein, putative [Ricinus communis]
8 Hb_000014_140 0.2242703101 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
9 Hb_007292_030 0.2511281546 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000380_070 0.2564067742 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003849_230 0.2574893527 - - PREDICTED: NEP1-interacting protein 2-like [Jatropha curcas]
12 Hb_000575_130 0.2576470839 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Populus euphratica]
13 Hb_000563_450 0.2582032838 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
14 Hb_000359_110 0.2653041152 transcription factor TF Family: NAC NAC domain-containing protein 42 [Theobroma cacao]
15 Hb_172864_010 0.2663590291 - - PREDICTED: 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase-like [Jatropha curcas]
16 Hb_113388_010 0.2724790048 - - conserved hypothetical protein [Ricinus communis]
17 Hb_084611_010 0.2740826751 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
18 Hb_004352_020 0.2773146115 - - o-methyltransferase, putative [Ricinus communis]
19 Hb_093432_020 0.2784603713 - - PREDICTED: QWRF motif-containing protein 3 [Jatropha curcas]
20 Hb_000486_050 0.2849869829 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]

Gene co-expression network

sample Hb_189237_010 Hb_189237_010 Hb_005389_010 Hb_005389_010 Hb_189237_010--Hb_005389_010 Hb_144951_010 Hb_144951_010 Hb_189237_010--Hb_144951_010 Hb_004108_010 Hb_004108_010 Hb_189237_010--Hb_004108_010 Hb_033623_010 Hb_033623_010 Hb_189237_010--Hb_033623_010 Hb_041177_010 Hb_041177_010 Hb_189237_010--Hb_041177_010 Hb_050495_010 Hb_050495_010 Hb_189237_010--Hb_050495_010 Hb_005389_010--Hb_144951_010 Hb_005389_010--Hb_004108_010 Hb_000014_140 Hb_000014_140 Hb_005389_010--Hb_000014_140 Hb_084611_010 Hb_084611_010 Hb_005389_010--Hb_084611_010 Hb_005389_010--Hb_033623_010 Hb_144951_010--Hb_004108_010 Hb_144951_010--Hb_033623_010 Hb_144951_010--Hb_050495_010 Hb_000359_110 Hb_000359_110 Hb_144951_010--Hb_000359_110 Hb_004108_010--Hb_033623_010 Hb_093432_020 Hb_093432_020 Hb_004108_010--Hb_093432_020 Hb_002928_070 Hb_002928_070 Hb_004108_010--Hb_002928_070 Hb_033623_010--Hb_041177_010 Hb_000684_340 Hb_000684_340 Hb_033623_010--Hb_000684_340 Hb_001081_040 Hb_001081_040 Hb_033623_010--Hb_001081_040 Hb_000994_010 Hb_000994_010 Hb_041177_010--Hb_000994_010 Hb_172864_010 Hb_172864_010 Hb_041177_010--Hb_172864_010 Hb_041177_010--Hb_001081_040 Hb_004352_020 Hb_004352_020 Hb_041177_010--Hb_004352_020 Hb_000380_070 Hb_000380_070 Hb_041177_010--Hb_000380_070 Hb_167316_010 Hb_167316_010 Hb_050495_010--Hb_167316_010 Hb_116685_010 Hb_116685_010 Hb_050495_010--Hb_116685_010 Hb_001565_120 Hb_001565_120 Hb_050495_010--Hb_001565_120 Hb_050495_010--Hb_004108_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.103639 0 0 0.0136117 0.0206812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0033463 0

CAGE analysis