Hb_167316_010

Information

Type -
Description -
Location Contig167316: 120-927
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04250g
description POPTRDRAFT_723198; Serine/threonine protein phosphatase PP1 isozyme 1
nr
ID XP_009781149.1
description PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 1 [Nicotiana sylvestris]
swissprot
ID P48489
description Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica GN=Os03g0268000 PE=2 SV=2
trembl
ID M1BVC1
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400020827 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_167316_010 0.0 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 1 [Nicotiana sylvestris]
2 Hb_050495_010 0.2077126691 - - heat-shock protein, putative [Ricinus communis]
3 Hb_007978_020 0.2343590359 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
4 Hb_000062_500 0.235890007 - - PREDICTED: urease-like [Zea mays]
5 Hb_004939_020 0.2495757864 - - gag/pol protein [Bryonia dioica]
6 Hb_054649_020 0.2574201637 - - PREDICTED: uncharacterized protein LOC102629934 [Citrus sinensis]
7 Hb_001250_120 0.2587520342 - - PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]
8 Hb_003816_020 0.2592636815 - - hypothetical protein POPTR_0017s05940g [Populus trichocarpa]
9 Hb_032018_010 0.2662784836 - - PREDICTED: uncharacterized protein LOC105778873 [Gossypium raimondii]
10 Hb_008064_010 0.2778781725 - - PREDICTED: ubiquitin-like domain-containing CTD phosphatase 1 [Jatropha curcas]
11 Hb_005203_050 0.2801831729 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
12 Hb_116685_010 0.2863714388 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
13 Hb_097433_020 0.2880674035 - - ATP-binding cassette transporter, putative [Ricinus communis]
14 Hb_000579_150 0.2910795063 - - PREDICTED: uncharacterized protein LOC104446353 [Eucalyptus grandis]
15 Hb_003772_020 0.2957828631 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
16 Hb_000574_150 0.3019676725 - - PREDICTED: protein SRG1-like [Jatropha curcas]
17 Hb_033926_010 0.308059845 - - -
18 Hb_001565_120 0.3094940262 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
19 Hb_033623_010 0.3103797822 - - -
20 Hb_001584_220 0.3128204416 - - galactinol synthase [Manihot esculenta]

Gene co-expression network

sample Hb_167316_010 Hb_167316_010 Hb_050495_010 Hb_050495_010 Hb_167316_010--Hb_050495_010 Hb_007978_020 Hb_007978_020 Hb_167316_010--Hb_007978_020 Hb_000062_500 Hb_000062_500 Hb_167316_010--Hb_000062_500 Hb_004939_020 Hb_004939_020 Hb_167316_010--Hb_004939_020 Hb_054649_020 Hb_054649_020 Hb_167316_010--Hb_054649_020 Hb_001250_120 Hb_001250_120 Hb_167316_010--Hb_001250_120 Hb_189237_010 Hb_189237_010 Hb_050495_010--Hb_189237_010 Hb_144951_010 Hb_144951_010 Hb_050495_010--Hb_144951_010 Hb_116685_010 Hb_116685_010 Hb_050495_010--Hb_116685_010 Hb_001565_120 Hb_001565_120 Hb_050495_010--Hb_001565_120 Hb_004108_010 Hb_004108_010 Hb_050495_010--Hb_004108_010 Hb_181975_010 Hb_181975_010 Hb_007978_020--Hb_181975_010 Hb_041237_010 Hb_041237_010 Hb_007978_020--Hb_041237_010 Hb_000574_150 Hb_000574_150 Hb_007978_020--Hb_000574_150 Hb_000014_130 Hb_000014_130 Hb_007978_020--Hb_000014_130 Hb_000617_040 Hb_000617_040 Hb_007978_020--Hb_000617_040 Hb_003398_010 Hb_003398_010 Hb_007978_020--Hb_003398_010 Hb_032018_010 Hb_032018_010 Hb_000062_500--Hb_032018_010 Hb_005203_050 Hb_005203_050 Hb_000062_500--Hb_005203_050 Hb_003772_020 Hb_003772_020 Hb_000062_500--Hb_003772_020 Hb_000062_500--Hb_007978_020 Hb_000062_500--Hb_000014_130 Hb_003816_020 Hb_003816_020 Hb_004939_020--Hb_003816_020 Hb_022452_010 Hb_022452_010 Hb_004939_020--Hb_022452_010 Hb_171659_010 Hb_171659_010 Hb_004939_020--Hb_171659_010 Hb_000205_070 Hb_000205_070 Hb_004939_020--Hb_000205_070 Hb_009189_030 Hb_009189_030 Hb_004939_020--Hb_009189_030 Hb_003337_070 Hb_003337_070 Hb_004939_020--Hb_003337_070 Hb_000813_080 Hb_000813_080 Hb_054649_020--Hb_000813_080 Hb_054649_020--Hb_001250_120 Hb_017651_010 Hb_017651_010 Hb_054649_020--Hb_017651_010 Hb_000579_150 Hb_000579_150 Hb_054649_020--Hb_000579_150 Hb_097433_020 Hb_097433_020 Hb_054649_020--Hb_097433_020 Hb_001250_110 Hb_001250_110 Hb_001250_120--Hb_001250_110 Hb_000014_140 Hb_000014_140 Hb_001250_120--Hb_000014_140 Hb_001250_120--Hb_001565_120 Hb_001250_120--Hb_000813_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.12416 3.57496 0 0 0.670647 1.43986
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis