Hb_054649_020

Information

Type -
Description -
Location Contig54649: 4184-5070
Sequence    

Annotation

kegg
ID fve:101300051
description putative ribonuclease H protein At1g65750-like
nr
ID XP_006473914.1
description PREDICTED: uncharacterized protein LOC102629934 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID Q9LSE9
description Reverse transcriptase-like protein OS=Arabidopsis thaliana GN=At3g25270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054649_020 0.0 - - PREDICTED: uncharacterized protein LOC102629934 [Citrus sinensis]
2 Hb_000813_080 0.1489748672 - - caspase, putative [Ricinus communis]
3 Hb_001250_120 0.2176861611 - - PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]
4 Hb_017651_010 0.2417747241 - - Ran GTPase binding protein, putative [Ricinus communis]
5 Hb_167316_010 0.2574201637 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 1 [Nicotiana sylvestris]
6 Hb_000579_150 0.2605717921 - - PREDICTED: uncharacterized protein LOC104446353 [Eucalyptus grandis]
7 Hb_097433_020 0.2696323414 - - ATP-binding cassette transporter, putative [Ricinus communis]
8 Hb_001529_030 0.2741606172 - - hypothetical protein PRUPE_ppa024472mg, partial [Prunus persica]
9 Hb_050495_010 0.2783031241 - - heat-shock protein, putative [Ricinus communis]
10 Hb_116685_010 0.2805588021 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
11 Hb_000334_200 0.2870897613 desease resistance Gene Name: RVT_1 PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
12 Hb_001565_120 0.2911784844 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
13 Hb_000563_450 0.2973572976 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
14 Hb_000575_130 0.2976329398 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Populus euphratica]
15 Hb_003849_230 0.2977163257 - - PREDICTED: NEP1-interacting protein 2-like [Jatropha curcas]
16 Hb_000486_050 0.2979671018 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_007292_030 0.3058123065 - - conserved hypothetical protein [Ricinus communis]
18 Hb_090459_010 0.3101454957 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
19 Hb_000188_030 0.3195470715 - - carboxylic ester hydrolase, putative [Ricinus communis]
20 Hb_001854_010 0.321068296 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]

Gene co-expression network

sample Hb_054649_020 Hb_054649_020 Hb_000813_080 Hb_000813_080 Hb_054649_020--Hb_000813_080 Hb_001250_120 Hb_001250_120 Hb_054649_020--Hb_001250_120 Hb_017651_010 Hb_017651_010 Hb_054649_020--Hb_017651_010 Hb_167316_010 Hb_167316_010 Hb_054649_020--Hb_167316_010 Hb_000579_150 Hb_000579_150 Hb_054649_020--Hb_000579_150 Hb_097433_020 Hb_097433_020 Hb_054649_020--Hb_097433_020 Hb_001529_030 Hb_001529_030 Hb_000813_080--Hb_001529_030 Hb_127819_010 Hb_127819_010 Hb_000813_080--Hb_127819_010 Hb_022534_020 Hb_022534_020 Hb_000813_080--Hb_022534_020 Hb_125981_010 Hb_125981_010 Hb_000813_080--Hb_125981_010 Hb_007292_030 Hb_007292_030 Hb_000813_080--Hb_007292_030 Hb_001250_110 Hb_001250_110 Hb_001250_120--Hb_001250_110 Hb_000014_140 Hb_000014_140 Hb_001250_120--Hb_000014_140 Hb_001565_120 Hb_001565_120 Hb_001250_120--Hb_001565_120 Hb_001250_120--Hb_000813_080 Hb_001250_120--Hb_167316_010 Hb_005715_020 Hb_005715_020 Hb_017651_010--Hb_005715_020 Hb_000334_200 Hb_000334_200 Hb_017651_010--Hb_000334_200 Hb_017651_010--Hb_000813_080 Hb_050495_010 Hb_050495_010 Hb_017651_010--Hb_050495_010 Hb_017651_010--Hb_097433_020 Hb_167316_010--Hb_050495_010 Hb_007978_020 Hb_007978_020 Hb_167316_010--Hb_007978_020 Hb_000062_500 Hb_000062_500 Hb_167316_010--Hb_000062_500 Hb_004939_020 Hb_004939_020 Hb_167316_010--Hb_004939_020 Hb_032076_010 Hb_032076_010 Hb_000579_150--Hb_032076_010 Hb_012188_010 Hb_012188_010 Hb_000579_150--Hb_012188_010 Hb_001217_060 Hb_001217_060 Hb_000579_150--Hb_001217_060 Hb_000188_030 Hb_000188_030 Hb_000579_150--Hb_000188_030 Hb_000579_150--Hb_001250_120 Hb_057217_010 Hb_057217_010 Hb_097433_020--Hb_057217_010 Hb_097433_020--Hb_005715_020 Hb_097433_020--Hb_000334_200 Hb_002737_020 Hb_002737_020 Hb_097433_020--Hb_002737_020 Hb_018118_020 Hb_018118_020 Hb_097433_020--Hb_018118_020 Hb_097433_020--Hb_050495_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.118079 0.530634 0 0.0230561 0 0.189094
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis