Hb_001529_030

Information

Type -
Description -
Location Contig1529: 19366-20312
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa024472mg
description hypothetical protein
nr
ID XP_007207799.1
description hypothetical protein PRUPE_ppa024472mg, partial [Prunus persica]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID M5WID7
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024472mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description ribonuclease h protein at1g65750

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13130: 19509-19798
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001529_030 0.0 - - hypothetical protein PRUPE_ppa024472mg, partial [Prunus persica]
2 Hb_001277_140 0.1891189456 - - PREDICTED: plasma membrane calcium-transporting ATPase 2-like [Takifugu rubripes]
3 Hb_000813_080 0.2154688789 - - caspase, putative [Ricinus communis]
4 Hb_082219_010 0.2216362876 - - Os03g0264300, partial [Oryza sativa Japonica Group]
5 Hb_012760_180 0.2263985777 - - Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]
6 Hb_152764_010 0.2307566178 - - Disease resistance protein RPS5, putative [Ricinus communis]
7 Hb_023024_010 0.2340679451 - - PREDICTED: uncharacterized protein LOC105767094 [Gossypium raimondii]
8 Hb_088084_010 0.2421667409 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
9 Hb_010531_060 0.2518017001 - - hypothetical protein B456_010G209400, partial [Gossypium raimondii]
10 Hb_002641_100 0.2520216614 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
11 Hb_001565_120 0.2526005608 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
12 Hb_127819_010 0.2598187146 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
13 Hb_022534_020 0.2634715184 - - PREDICTED: uncharacterized protein LOC103422158 [Malus domestica]
14 Hb_001250_120 0.2646507419 - - PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]
15 Hb_003893_020 0.2680793631 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 [Jatropha curcas]
16 Hb_002760_060 0.2731042574 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
17 Hb_054649_020 0.2741606172 - - PREDICTED: uncharacterized protein LOC102629934 [Citrus sinensis]
18 Hb_001922_160 0.2747880261 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
19 Hb_000188_030 0.2757637919 - - carboxylic ester hydrolase, putative [Ricinus communis]
20 Hb_004352_020 0.2802056727 - - o-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001529_030 Hb_001529_030 Hb_001277_140 Hb_001277_140 Hb_001529_030--Hb_001277_140 Hb_000813_080 Hb_000813_080 Hb_001529_030--Hb_000813_080 Hb_082219_010 Hb_082219_010 Hb_001529_030--Hb_082219_010 Hb_012760_180 Hb_012760_180 Hb_001529_030--Hb_012760_180 Hb_152764_010 Hb_152764_010 Hb_001529_030--Hb_152764_010 Hb_023024_010 Hb_023024_010 Hb_001529_030--Hb_023024_010 Hb_088084_010 Hb_088084_010 Hb_001277_140--Hb_088084_010 Hb_002760_060 Hb_002760_060 Hb_001277_140--Hb_002760_060 Hb_001922_160 Hb_001922_160 Hb_001277_140--Hb_001922_160 Hb_131956_010 Hb_131956_010 Hb_001277_140--Hb_131956_010 Hb_003053_060 Hb_003053_060 Hb_001277_140--Hb_003053_060 Hb_054649_020 Hb_054649_020 Hb_000813_080--Hb_054649_020 Hb_127819_010 Hb_127819_010 Hb_000813_080--Hb_127819_010 Hb_022534_020 Hb_022534_020 Hb_000813_080--Hb_022534_020 Hb_125981_010 Hb_125981_010 Hb_000813_080--Hb_125981_010 Hb_007292_030 Hb_007292_030 Hb_000813_080--Hb_007292_030 Hb_082219_010--Hb_023024_010 Hb_010531_060 Hb_010531_060 Hb_082219_010--Hb_010531_060 Hb_005269_010 Hb_005269_010 Hb_082219_010--Hb_005269_010 Hb_002269_010 Hb_002269_010 Hb_082219_010--Hb_002269_010 Hb_001703_100 Hb_001703_100 Hb_082219_010--Hb_001703_100 Hb_001565_120 Hb_001565_120 Hb_012760_180--Hb_001565_120 Hb_011885_010 Hb_011885_010 Hb_012760_180--Hb_011885_010 Hb_138575_010 Hb_138575_010 Hb_012760_180--Hb_138575_010 Hb_116635_010 Hb_116635_010 Hb_012760_180--Hb_116635_010 Hb_143863_010 Hb_143863_010 Hb_012760_180--Hb_143863_010 Hb_000960_010 Hb_000960_010 Hb_012760_180--Hb_000960_010 Hb_001529_020 Hb_001529_020 Hb_152764_010--Hb_001529_020 Hb_007371_010 Hb_007371_010 Hb_152764_010--Hb_007371_010 Hb_133646_010 Hb_133646_010 Hb_152764_010--Hb_133646_010 Hb_000336_160 Hb_000336_160 Hb_152764_010--Hb_000336_160 Hb_027913_010 Hb_027913_010 Hb_152764_010--Hb_027913_010 Hb_001510_050 Hb_001510_050 Hb_152764_010--Hb_001510_050 Hb_023024_010--Hb_010531_060 Hb_023024_010--Hb_005269_010 Hb_023024_010--Hb_002269_010 Hb_023024_010--Hb_001703_100 Hb_123056_010 Hb_123056_010 Hb_023024_010--Hb_123056_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.944582 5.15506 0.0190168 0.326371 0 0.201159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0921884 0

CAGE analysis