Hb_007292_030

Information

Type -
Description -
Location Contig7292: 64121-65932
Sequence    

Annotation

kegg
ID rcu:RCOM_0032240
description hypothetical protein
nr
ID XP_002533738.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FFU7
description Putative F-box/LRR-repeat protein At5g54820 OS=Arabidopsis thaliana GN=At5g54820 PE=3 SV=1
trembl
ID B9T669
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0032240 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein at1g49610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007292_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003849_230 0.0440220973 - - PREDICTED: NEP1-interacting protein 2-like [Jatropha curcas]
3 Hb_000575_130 0.0447284554 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Populus euphratica]
4 Hb_000563_450 0.0471611898 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
5 Hb_000486_050 0.1234509374 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_113388_010 0.1274250183 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000380_070 0.2009550421 - - conserved hypothetical protein [Ricinus communis]
8 Hb_089032_060 0.2027994889 - - Uncharacterized protein TCM_027342 [Theobroma cacao]
9 Hb_001854_010 0.2135886222 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_032299_030 0.2255331434 transcription factor TF Family: MYB PREDICTED: transcription factor MYB59 isoform X1 [Jatropha curcas]
11 Hb_000684_170 0.2369733789 - - -
12 Hb_001501_050 0.2424138786 - - Wall associated kinase-like 6, putative [Theobroma cacao]
13 Hb_000813_080 0.2488613875 - - caspase, putative [Ricinus communis]
14 Hb_172864_010 0.2499043587 - - PREDICTED: 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase-like [Jatropha curcas]
15 Hb_189237_010 0.2511281546 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_004352_020 0.25147295 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_084611_010 0.2553478254 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
18 Hb_000243_100 0.2630764877 - - Purple acid phosphatase precursor, putative [Ricinus communis]
19 Hb_004162_110 0.2631055567 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
20 Hb_002800_040 0.2634760752 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_007292_030 Hb_007292_030 Hb_003849_230 Hb_003849_230 Hb_007292_030--Hb_003849_230 Hb_000575_130 Hb_000575_130 Hb_007292_030--Hb_000575_130 Hb_000563_450 Hb_000563_450 Hb_007292_030--Hb_000563_450 Hb_000486_050 Hb_000486_050 Hb_007292_030--Hb_000486_050 Hb_113388_010 Hb_113388_010 Hb_007292_030--Hb_113388_010 Hb_000380_070 Hb_000380_070 Hb_007292_030--Hb_000380_070 Hb_003849_230--Hb_000575_130 Hb_003849_230--Hb_000563_450 Hb_003849_230--Hb_000486_050 Hb_001854_010 Hb_001854_010 Hb_003849_230--Hb_001854_010 Hb_003849_230--Hb_113388_010 Hb_000575_130--Hb_000563_450 Hb_000575_130--Hb_000486_050 Hb_000575_130--Hb_001854_010 Hb_000575_130--Hb_113388_010 Hb_000563_450--Hb_000486_050 Hb_000563_450--Hb_001854_010 Hb_000563_450--Hb_113388_010 Hb_000486_050--Hb_001854_010 Hb_000243_100 Hb_000243_100 Hb_000486_050--Hb_000243_100 Hb_089032_060 Hb_089032_060 Hb_113388_010--Hb_089032_060 Hb_032299_030 Hb_032299_030 Hb_113388_010--Hb_032299_030 Hb_113388_010--Hb_000380_070 Hb_004352_020 Hb_004352_020 Hb_113388_010--Hb_004352_020 Hb_000380_070--Hb_004352_020 Hb_172864_010 Hb_172864_010 Hb_000380_070--Hb_172864_010 Hb_000380_070--Hb_089032_060 Hb_000380_070--Hb_032299_030 Hb_000395_160 Hb_000395_160 Hb_000380_070--Hb_000395_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0581146 0 0 0 0.01292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis