Hb_001854_010

Information

Type -
Description -
Location Contig1854: 183-1064
Sequence    

Annotation

kegg
ID osa:9268620
description Os10g0357350
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID A0A0B0MQD4
description Phosphate import ATP-binding PstB 2 OS=Gossypium arboreum GN=F383_30012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001854_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_000243_100 0.0506780259 - - Purple acid phosphatase precursor, putative [Ricinus communis]
3 Hb_004162_110 0.0507078953 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
4 Hb_002800_040 0.0510886259 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_011362_030 0.0902450789 - - polyprotein [Oryza australiensis]
6 Hb_000486_050 0.0913094 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_012733_080 0.0986645014 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_006183_010 0.099464015 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_080147_010 0.100602539 - - -
10 Hb_078466_020 0.1327703284 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
11 Hb_002871_200 0.1589352704 - - -
12 Hb_003581_040 0.1599943639 - - hypothetical protein PHAVU_002G080900g [Phaseolus vulgaris]
13 Hb_022348_020 0.1620841606 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_000563_450 0.1673329657 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
15 Hb_000575_130 0.1697342053 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Populus euphratica]
16 Hb_003849_230 0.1704311255 - - PREDICTED: NEP1-interacting protein 2-like [Jatropha curcas]
17 Hb_000078_040 0.1812695459 - - PREDICTED: uncharacterized protein LOC104907366 [Beta vulgaris subsp. vulgaris]
18 Hb_012815_020 0.1951022893 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_007139_010 0.1958232575 - - hypothetical protein POPTR_0016s134801g, partial [Populus trichocarpa]
20 Hb_019859_030 0.1961078602 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]

Gene co-expression network

sample Hb_001854_010 Hb_001854_010 Hb_000243_100 Hb_000243_100 Hb_001854_010--Hb_000243_100 Hb_004162_110 Hb_004162_110 Hb_001854_010--Hb_004162_110 Hb_002800_040 Hb_002800_040 Hb_001854_010--Hb_002800_040 Hb_011362_030 Hb_011362_030 Hb_001854_010--Hb_011362_030 Hb_000486_050 Hb_000486_050 Hb_001854_010--Hb_000486_050 Hb_012733_080 Hb_012733_080 Hb_001854_010--Hb_012733_080 Hb_000243_100--Hb_004162_110 Hb_000243_100--Hb_002800_040 Hb_000243_100--Hb_011362_030 Hb_000243_100--Hb_012733_080 Hb_006183_010 Hb_006183_010 Hb_000243_100--Hb_006183_010 Hb_080147_010 Hb_080147_010 Hb_000243_100--Hb_080147_010 Hb_004162_110--Hb_002800_040 Hb_004162_110--Hb_011362_030 Hb_004162_110--Hb_012733_080 Hb_004162_110--Hb_006183_010 Hb_004162_110--Hb_080147_010 Hb_002800_040--Hb_011362_030 Hb_002800_040--Hb_012733_080 Hb_002800_040--Hb_006183_010 Hb_002800_040--Hb_080147_010 Hb_011362_030--Hb_012733_080 Hb_011362_030--Hb_006183_010 Hb_011362_030--Hb_080147_010 Hb_000563_450 Hb_000563_450 Hb_000486_050--Hb_000563_450 Hb_000575_130 Hb_000575_130 Hb_000486_050--Hb_000575_130 Hb_003849_230 Hb_003849_230 Hb_000486_050--Hb_003849_230 Hb_007292_030 Hb_007292_030 Hb_000486_050--Hb_007292_030 Hb_000486_050--Hb_000243_100 Hb_012733_080--Hb_006183_010 Hb_012733_080--Hb_080147_010 Hb_078466_020 Hb_078466_020 Hb_012733_080--Hb_078466_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0432656 0 0 0 0.0299586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis