Hb_080147_010

Information

Type -
Description -
Location Contig80147: 6347-8874
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080147_010 0.0 - - -
2 Hb_006183_010 0.001142492 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_012733_080 0.0019447379 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_011362_030 0.0103902288 - - polyprotein [Oryza australiensis]
5 Hb_078466_020 0.0323174354 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
6 Hb_002800_040 0.0496029976 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_004162_110 0.0499837498 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
8 Hb_000243_100 0.0500136205 - - Purple acid phosphatase precursor, putative [Ricinus communis]
9 Hb_002871_200 0.0586582082 - - -
10 Hb_003581_040 0.0597254579 - - hypothetical protein PHAVU_002G080900g [Phaseolus vulgaris]
11 Hb_022348_020 0.0618315878 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_000078_040 0.0811819158 - - PREDICTED: uncharacterized protein LOC104907366 [Beta vulgaris subsp. vulgaris]
13 Hb_012815_020 0.095150629 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_007139_010 0.095879082 - - hypothetical protein POPTR_0016s134801g, partial [Populus trichocarpa]
15 Hb_019859_030 0.0961666504 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
16 Hb_001854_010 0.100602539 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_124976_010 0.1032394535 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
18 Hb_004410_060 0.1233549484 - - -
19 Hb_007545_160 0.1588824669 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
20 Hb_000486_050 0.1912645499 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]

Gene co-expression network

sample Hb_080147_010 Hb_080147_010 Hb_006183_010 Hb_006183_010 Hb_080147_010--Hb_006183_010 Hb_012733_080 Hb_012733_080 Hb_080147_010--Hb_012733_080 Hb_011362_030 Hb_011362_030 Hb_080147_010--Hb_011362_030 Hb_078466_020 Hb_078466_020 Hb_080147_010--Hb_078466_020 Hb_002800_040 Hb_002800_040 Hb_080147_010--Hb_002800_040 Hb_004162_110 Hb_004162_110 Hb_080147_010--Hb_004162_110 Hb_006183_010--Hb_012733_080 Hb_006183_010--Hb_011362_030 Hb_006183_010--Hb_078466_020 Hb_006183_010--Hb_002800_040 Hb_006183_010--Hb_004162_110 Hb_012733_080--Hb_011362_030 Hb_012733_080--Hb_078466_020 Hb_012733_080--Hb_002800_040 Hb_012733_080--Hb_004162_110 Hb_011362_030--Hb_002800_040 Hb_011362_030--Hb_004162_110 Hb_000243_100 Hb_000243_100 Hb_011362_030--Hb_000243_100 Hb_002871_200 Hb_002871_200 Hb_078466_020--Hb_002871_200 Hb_003581_040 Hb_003581_040 Hb_078466_020--Hb_003581_040 Hb_022348_020 Hb_022348_020 Hb_078466_020--Hb_022348_020 Hb_002800_040--Hb_004162_110 Hb_002800_040--Hb_000243_100 Hb_004162_110--Hb_000243_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0788962 0 0 0 0.0879756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis