Hb_002800_040

Information

Type -
Description -
Location Contig2800: 25769-28356
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002800_040 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_004162_110 0.0003810801 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
3 Hb_000243_100 0.0004109766 - - Purple acid phosphatase precursor, putative [Ricinus communis]
4 Hb_011362_030 0.0392197753 - - polyprotein [Oryza australiensis]
5 Hb_012733_080 0.0476598537 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_006183_010 0.0484614579 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_080147_010 0.0496029976 - - -
8 Hb_001854_010 0.0510886259 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_078466_020 0.0818747891 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
10 Hb_002871_200 0.1081513001 - - -
11 Hb_003581_040 0.1092154253 - - hypothetical protein PHAVU_002G080900g [Phaseolus vulgaris]
12 Hb_022348_020 0.1113152692 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_000078_040 0.1306003064 - - PREDICTED: uncharacterized protein LOC104907366 [Beta vulgaris subsp. vulgaris]
14 Hb_000486_050 0.142146413 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_012815_020 0.1445133058 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_007139_010 0.1452386528 - - hypothetical protein POPTR_0016s134801g, partial [Populus trichocarpa]
17 Hb_019859_030 0.1455249894 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
18 Hb_124976_010 0.1525665117 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
19 Hb_004410_060 0.172582506 - - -
20 Hb_007545_160 0.2078946852 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]

Gene co-expression network

sample Hb_002800_040 Hb_002800_040 Hb_004162_110 Hb_004162_110 Hb_002800_040--Hb_004162_110 Hb_000243_100 Hb_000243_100 Hb_002800_040--Hb_000243_100 Hb_011362_030 Hb_011362_030 Hb_002800_040--Hb_011362_030 Hb_012733_080 Hb_012733_080 Hb_002800_040--Hb_012733_080 Hb_006183_010 Hb_006183_010 Hb_002800_040--Hb_006183_010 Hb_080147_010 Hb_080147_010 Hb_002800_040--Hb_080147_010 Hb_004162_110--Hb_000243_100 Hb_004162_110--Hb_011362_030 Hb_004162_110--Hb_012733_080 Hb_004162_110--Hb_006183_010 Hb_004162_110--Hb_080147_010 Hb_000243_100--Hb_011362_030 Hb_000243_100--Hb_012733_080 Hb_000243_100--Hb_006183_010 Hb_000243_100--Hb_080147_010 Hb_011362_030--Hb_012733_080 Hb_011362_030--Hb_006183_010 Hb_011362_030--Hb_080147_010 Hb_012733_080--Hb_006183_010 Hb_012733_080--Hb_080147_010 Hb_078466_020 Hb_078466_020 Hb_012733_080--Hb_078466_020 Hb_006183_010--Hb_080147_010 Hb_006183_010--Hb_078466_020 Hb_080147_010--Hb_078466_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00882878 0 0 0 0.00779225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis