Hb_004162_110

Information

Type -
Description -
Location Contig4162: 94615-97380
Sequence    

Annotation

kegg
ID rcu:RCOM_0476170
description Lysosomal Pro-X carboxypeptidase, putative (EC:3.4.16.2)
nr
ID KDP43937.1
description hypothetical protein JCGZ_05404 [Jatropha curcas]
swissprot
ID Q5RBU7
description Lysosomal Pro-X carboxypeptidase OS=Pongo abelii GN=PRCP PE=2 SV=1
trembl
ID A0A067L686
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05404 PE=4 SV=1
Gene Ontology
ID GO:0008236
description lysosomal pro-x

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_110 0.0 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
2 Hb_000243_100 2.98966e-05 - - Purple acid phosphatase precursor, putative [Ricinus communis]
3 Hb_002800_040 0.0003810801 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_011362_030 0.0396006498 - - polyprotein [Oryza australiensis]
5 Hb_012733_080 0.048040631 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_006183_010 0.0488422249 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_080147_010 0.0499837498 - - -
8 Hb_001854_010 0.0507078953 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_078466_020 0.0822549796 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
10 Hb_002871_200 0.1085308281 - - -
11 Hb_003581_040 0.1095949225 - - hypothetical protein PHAVU_002G080900g [Phaseolus vulgaris]
12 Hb_022348_020 0.1116947047 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_000078_040 0.1309791193 - - PREDICTED: uncharacterized protein LOC104907366 [Beta vulgaris subsp. vulgaris]
14 Hb_000486_050 0.1417681602 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_012815_020 0.144891605 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_007139_010 0.1456169237 - - hypothetical protein POPTR_0016s134801g, partial [Populus trichocarpa]
17 Hb_019859_030 0.1459032492 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
18 Hb_124976_010 0.1529444884 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
19 Hb_004410_060 0.1729595994 - - -
20 Hb_007545_160 0.2082699255 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]

Gene co-expression network

sample Hb_004162_110 Hb_004162_110 Hb_000243_100 Hb_000243_100 Hb_004162_110--Hb_000243_100 Hb_002800_040 Hb_002800_040 Hb_004162_110--Hb_002800_040 Hb_011362_030 Hb_011362_030 Hb_004162_110--Hb_011362_030 Hb_012733_080 Hb_012733_080 Hb_004162_110--Hb_012733_080 Hb_006183_010 Hb_006183_010 Hb_004162_110--Hb_006183_010 Hb_080147_010 Hb_080147_010 Hb_004162_110--Hb_080147_010 Hb_000243_100--Hb_002800_040 Hb_000243_100--Hb_011362_030 Hb_000243_100--Hb_012733_080 Hb_000243_100--Hb_006183_010 Hb_000243_100--Hb_080147_010 Hb_002800_040--Hb_011362_030 Hb_002800_040--Hb_012733_080 Hb_002800_040--Hb_006183_010 Hb_002800_040--Hb_080147_010 Hb_011362_030--Hb_012733_080 Hb_011362_030--Hb_006183_010 Hb_011362_030--Hb_080147_010 Hb_012733_080--Hb_006183_010 Hb_012733_080--Hb_080147_010 Hb_078466_020 Hb_078466_020 Hb_012733_080--Hb_078466_020 Hb_006183_010--Hb_080147_010 Hb_006183_010--Hb_078466_020 Hb_080147_010--Hb_078466_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0135508 0 0 0 0.0119384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis