Hb_078466_020

Information

Type -
Description -
Location Contig78466: 4453-5739
Sequence    

Annotation

kegg
ID zma:103648021
description uncharacterized LOC103648021
nr
ID XP_012085041.1
description PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0N0U5
description DNA-dependent protein kinase catalytic subunit OS=Gossypium arboreum GN=F383_32989 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078466_020 0.0 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
2 Hb_002871_200 0.0263586455 - - -
3 Hb_003581_040 0.0274269659 - - hypothetical protein PHAVU_002G080900g [Phaseolus vulgaris]
4 Hb_022348_020 0.0295352891 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
5 Hb_080147_010 0.0323174354 - - -
6 Hb_006183_010 0.0334594939 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_012733_080 0.0342614179 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_011362_030 0.0427026433 - - polyprotein [Oryza australiensis]
9 Hb_000078_040 0.0489108155 - - PREDICTED: uncharacterized protein LOC104907366 [Beta vulgaris subsp. vulgaris]
10 Hb_012815_020 0.062903492 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
11 Hb_007139_010 0.0636333303 - - hypothetical protein POPTR_0016s134801g, partial [Populus trichocarpa]
12 Hb_019859_030 0.0639214492 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
13 Hb_124976_010 0.0710084624 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
14 Hb_002800_040 0.0818747891 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_004162_110 0.0822549796 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
16 Hb_000243_100 0.0822848061 - - Purple acid phosphatase precursor, putative [Ricinus communis]
17 Hb_004410_060 0.0911715327 - - -
18 Hb_007545_160 0.1268101991 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
19 Hb_001854_010 0.1327703284 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_043950_010 0.1703645515 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]

Gene co-expression network

sample Hb_078466_020 Hb_078466_020 Hb_002871_200 Hb_002871_200 Hb_078466_020--Hb_002871_200 Hb_003581_040 Hb_003581_040 Hb_078466_020--Hb_003581_040 Hb_022348_020 Hb_022348_020 Hb_078466_020--Hb_022348_020 Hb_080147_010 Hb_080147_010 Hb_078466_020--Hb_080147_010 Hb_006183_010 Hb_006183_010 Hb_078466_020--Hb_006183_010 Hb_012733_080 Hb_012733_080 Hb_078466_020--Hb_012733_080 Hb_002871_200--Hb_003581_040 Hb_002871_200--Hb_022348_020 Hb_000078_040 Hb_000078_040 Hb_002871_200--Hb_000078_040 Hb_012815_020 Hb_012815_020 Hb_002871_200--Hb_012815_020 Hb_007139_010 Hb_007139_010 Hb_002871_200--Hb_007139_010 Hb_003581_040--Hb_022348_020 Hb_003581_040--Hb_000078_040 Hb_003581_040--Hb_012815_020 Hb_003581_040--Hb_007139_010 Hb_022348_020--Hb_000078_040 Hb_022348_020--Hb_012815_020 Hb_022348_020--Hb_007139_010 Hb_080147_010--Hb_006183_010 Hb_080147_010--Hb_012733_080 Hb_011362_030 Hb_011362_030 Hb_080147_010--Hb_011362_030 Hb_002800_040 Hb_002800_040 Hb_080147_010--Hb_002800_040 Hb_004162_110 Hb_004162_110 Hb_080147_010--Hb_004162_110 Hb_006183_010--Hb_012733_080 Hb_006183_010--Hb_011362_030 Hb_006183_010--Hb_002800_040 Hb_006183_010--Hb_004162_110 Hb_012733_080--Hb_011362_030 Hb_012733_080--Hb_002800_040 Hb_012733_080--Hb_004162_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0169385 0 0 0 0.0220085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis