Hb_007139_010

Information

Type -
Description -
Location Contig7139: 3200-4729
Sequence    

Annotation

kegg
ID pop:POPTR_0016s134801
description hypothetical protein
nr
ID XP_006374029.1
description hypothetical protein POPTR_0016s134801g, partial [Populus trichocarpa]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID U5FPD6
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0016s134801g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007139_010 0.0 - - hypothetical protein POPTR_0016s134801g, partial [Populus trichocarpa]
2 Hb_019859_030 0.0002885706 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
3 Hb_012815_020 0.0007309634 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_124976_010 0.0073880438 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
5 Hb_000078_040 0.0147399888 - - PREDICTED: uncharacterized protein LOC104907366 [Beta vulgaris subsp. vulgaris]
6 Hb_004410_060 0.0276010688 - - -
7 Hb_022348_020 0.0341221644 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_003581_040 0.0362301183 - - hypothetical protein PHAVU_002G080900g [Phaseolus vulgaris]
9 Hb_002871_200 0.037298171 - - -
10 Hb_007545_160 0.0633834969 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
11 Hb_078466_020 0.0636333303 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
12 Hb_080147_010 0.095879082 - - -
13 Hb_006183_010 0.0970177667 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_012733_080 0.0978172879 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_011362_030 0.1062315328 - - polyprotein [Oryza australiensis]
16 Hb_043950_010 0.1072193304 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
17 Hb_002800_040 0.1452386528 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_004162_110 0.1456169237 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
19 Hb_000243_100 0.1456465993 - - Purple acid phosphatase precursor, putative [Ricinus communis]
20 Hb_000580_040 0.1582956026 - - -

Gene co-expression network

sample Hb_007139_010 Hb_007139_010 Hb_019859_030 Hb_019859_030 Hb_007139_010--Hb_019859_030 Hb_012815_020 Hb_012815_020 Hb_007139_010--Hb_012815_020 Hb_124976_010 Hb_124976_010 Hb_007139_010--Hb_124976_010 Hb_000078_040 Hb_000078_040 Hb_007139_010--Hb_000078_040 Hb_004410_060 Hb_004410_060 Hb_007139_010--Hb_004410_060 Hb_022348_020 Hb_022348_020 Hb_007139_010--Hb_022348_020 Hb_019859_030--Hb_012815_020 Hb_019859_030--Hb_124976_010 Hb_019859_030--Hb_000078_040 Hb_019859_030--Hb_004410_060 Hb_019859_030--Hb_022348_020 Hb_012815_020--Hb_124976_010 Hb_012815_020--Hb_000078_040 Hb_012815_020--Hb_004410_060 Hb_012815_020--Hb_022348_020 Hb_124976_010--Hb_004410_060 Hb_124976_010--Hb_000078_040 Hb_124976_010--Hb_022348_020 Hb_000078_040--Hb_022348_020 Hb_003581_040 Hb_003581_040 Hb_000078_040--Hb_003581_040 Hb_007545_160 Hb_007545_160 Hb_004410_060--Hb_007545_160 Hb_004410_060--Hb_000078_040 Hb_022348_020--Hb_003581_040 Hb_002871_200 Hb_002871_200 Hb_022348_020--Hb_002871_200 Hb_078466_020 Hb_078466_020 Hb_022348_020--Hb_078466_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0332782 0 0 0 0.058753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis