Hb_007545_160

Information

Type transcription factor
Description TF Family: HB
Location Contig7545: 111410-112816
Sequence    

Annotation

kegg
ID rcu:RCOM_1320640
description Protein WUSCHEL, putative
nr
ID XP_002525671.1
description Protein WUSCHEL, putative [Ricinus communis]
swissprot
ID Q6X7J3
description WUSCHEL-related homeobox 11 OS=Arabidopsis thaliana GN=WOX11 PE=2 SV=2
trembl
ID B9SI52
description Protein WUSCHEL, putative OS=Ricinus communis GN=RCOM_1320640 PE=4 SV=1
Gene Ontology
ID GO:0005634
description wuschel-related homeobox 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007545_160 0.0 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
2 Hb_004410_060 0.0358099938 - - -
3 Hb_043950_010 0.0439795025 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
4 Hb_124976_010 0.0560067598 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
5 Hb_019859_030 0.0630954204 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
6 Hb_007139_010 0.0633834969 - - hypothetical protein POPTR_0016s134801g, partial [Populus trichocarpa]
7 Hb_012815_020 0.0641131899 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_000078_040 0.0780926975 - - PREDICTED: uncharacterized protein LOC104907366 [Beta vulgaris subsp. vulgaris]
9 Hb_022348_020 0.0974183272 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_003581_040 0.0995190659 - - hypothetical protein PHAVU_002G080900g [Phaseolus vulgaris]
11 Hb_002871_200 0.1005833844 - - -
12 Hb_078466_020 0.1268101991 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
13 Hb_000580_040 0.1279725784 - - -
14 Hb_000833_080 0.1563918894 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
15 Hb_080147_010 0.1588824669 - - -
16 Hb_006183_010 0.1600142349 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_012733_080 0.1608088679 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_011362_030 0.1691700961 - - polyprotein [Oryza australiensis]
19 Hb_000696_320 0.1846856591 - - PREDICTED: uncharacterized protein LOC104884717 [Beta vulgaris subsp. vulgaris]
20 Hb_173423_010 0.1907202148 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007545_160 Hb_007545_160 Hb_004410_060 Hb_004410_060 Hb_007545_160--Hb_004410_060 Hb_043950_010 Hb_043950_010 Hb_007545_160--Hb_043950_010 Hb_124976_010 Hb_124976_010 Hb_007545_160--Hb_124976_010 Hb_019859_030 Hb_019859_030 Hb_007545_160--Hb_019859_030 Hb_007139_010 Hb_007139_010 Hb_007545_160--Hb_007139_010 Hb_012815_020 Hb_012815_020 Hb_007545_160--Hb_012815_020 Hb_004410_060--Hb_124976_010 Hb_004410_060--Hb_019859_030 Hb_004410_060--Hb_007139_010 Hb_004410_060--Hb_012815_020 Hb_000078_040 Hb_000078_040 Hb_004410_060--Hb_000078_040 Hb_043950_010--Hb_004410_060 Hb_043950_010--Hb_124976_010 Hb_043950_010--Hb_019859_030 Hb_043950_010--Hb_007139_010 Hb_043950_010--Hb_012815_020 Hb_124976_010--Hb_019859_030 Hb_124976_010--Hb_007139_010 Hb_124976_010--Hb_012815_020 Hb_124976_010--Hb_000078_040 Hb_022348_020 Hb_022348_020 Hb_124976_010--Hb_022348_020 Hb_019859_030--Hb_007139_010 Hb_019859_030--Hb_012815_020 Hb_019859_030--Hb_000078_040 Hb_019859_030--Hb_022348_020 Hb_007139_010--Hb_012815_020 Hb_007139_010--Hb_000078_040 Hb_007139_010--Hb_022348_020 Hb_012815_020--Hb_000078_040 Hb_012815_020--Hb_022348_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0306434 0 0 0 0.074426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis