Hb_022348_020

Information

Type -
Description -
Location Contig22348: 9578-10354
Sequence    

Annotation

kegg
ID pmum:103328715
description uncharacterized LOC103328715
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID C7J7N6
description Os10g0357350 protein OS=Oryza sativa subsp. japonica GN=Os10g0357350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022348_020 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_003581_040 0.0021089524 - - hypothetical protein PHAVU_002G080900g [Phaseolus vulgaris]
3 Hb_002871_200 0.0031775542 - - -
4 Hb_000078_040 0.019385967 - - PREDICTED: uncharacterized protein LOC104907366 [Beta vulgaris subsp. vulgaris]
5 Hb_078466_020 0.0295352891 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
6 Hb_012815_020 0.0333915282 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
7 Hb_007139_010 0.0341221644 - - hypothetical protein POPTR_0016s134801g, partial [Populus trichocarpa]
8 Hb_019859_030 0.0344106017 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
9 Hb_124976_010 0.0415060707 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
10 Hb_004410_060 0.0616998791 - - -
11 Hb_080147_010 0.0618315878 - - -
12 Hb_006183_010 0.0629725056 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_012733_080 0.0637736128 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_011362_030 0.0722054476 - - polyprotein [Oryza australiensis]
15 Hb_007545_160 0.0974183272 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
16 Hb_002800_040 0.1113152692 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_004162_110 0.1116947047 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
18 Hb_000243_100 0.1117244718 - - Purple acid phosphatase precursor, putative [Ricinus communis]
19 Hb_043950_010 0.1411184394 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
20 Hb_001854_010 0.1620841606 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]

Gene co-expression network

sample Hb_022348_020 Hb_022348_020 Hb_003581_040 Hb_003581_040 Hb_022348_020--Hb_003581_040 Hb_002871_200 Hb_002871_200 Hb_022348_020--Hb_002871_200 Hb_000078_040 Hb_000078_040 Hb_022348_020--Hb_000078_040 Hb_078466_020 Hb_078466_020 Hb_022348_020--Hb_078466_020 Hb_012815_020 Hb_012815_020 Hb_022348_020--Hb_012815_020 Hb_007139_010 Hb_007139_010 Hb_022348_020--Hb_007139_010 Hb_003581_040--Hb_002871_200 Hb_003581_040--Hb_000078_040 Hb_003581_040--Hb_078466_020 Hb_003581_040--Hb_012815_020 Hb_003581_040--Hb_007139_010 Hb_002871_200--Hb_000078_040 Hb_002871_200--Hb_078466_020 Hb_002871_200--Hb_012815_020 Hb_002871_200--Hb_007139_010 Hb_000078_040--Hb_012815_020 Hb_000078_040--Hb_007139_010 Hb_019859_030 Hb_019859_030 Hb_000078_040--Hb_019859_030 Hb_124976_010 Hb_124976_010 Hb_000078_040--Hb_124976_010 Hb_080147_010 Hb_080147_010 Hb_078466_020--Hb_080147_010 Hb_006183_010 Hb_006183_010 Hb_078466_020--Hb_006183_010 Hb_012733_080 Hb_012733_080 Hb_078466_020--Hb_012733_080 Hb_012815_020--Hb_007139_010 Hb_012815_020--Hb_019859_030 Hb_012815_020--Hb_124976_010 Hb_004410_060 Hb_004410_060 Hb_012815_020--Hb_004410_060 Hb_007139_010--Hb_019859_030 Hb_007139_010--Hb_124976_010 Hb_007139_010--Hb_004410_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0919702 0 0 0 0.137603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis