Hb_012815_020

Information

Type -
Description -
Location Contig12815: 17498-18784
Sequence    

Annotation

kegg
ID osa:9268620
description Os10g0357350
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID Q8RU68
description Putative 22 kDa kafirin cluster; Ty3-Gypsy type OS=Oryza sativa GN=OSJNBa0022D10.4 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012815_020 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_007139_010 0.0007309634 - - hypothetical protein POPTR_0016s134801g, partial [Populus trichocarpa]
3 Hb_019859_030 0.0010195339 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
4 Hb_124976_010 0.0081189894 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
5 Hb_000078_040 0.0140090856 - - PREDICTED: uncharacterized protein LOC104907366 [Beta vulgaris subsp. vulgaris]
6 Hb_004410_060 0.0283317958 - - -
7 Hb_022348_020 0.0333915282 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_003581_040 0.0354995238 - - hypothetical protein PHAVU_002G080900g [Phaseolus vulgaris]
9 Hb_002871_200 0.0365675984 - - -
10 Hb_078466_020 0.062903492 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
11 Hb_007545_160 0.0641131899 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
12 Hb_080147_010 0.095150629 - - -
13 Hb_006183_010 0.0962893721 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_012733_080 0.0970889346 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_011362_030 0.105503634 - - polyprotein [Oryza australiensis]
16 Hb_043950_010 0.107946511 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
17 Hb_002800_040 0.1445133058 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_004162_110 0.144891605 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
19 Hb_000243_100 0.1449212829 - - Purple acid phosphatase precursor, putative [Ricinus communis]
20 Hb_000580_040 0.1587549984 - - -

Gene co-expression network

sample Hb_012815_020 Hb_012815_020 Hb_007139_010 Hb_007139_010 Hb_012815_020--Hb_007139_010 Hb_019859_030 Hb_019859_030 Hb_012815_020--Hb_019859_030 Hb_124976_010 Hb_124976_010 Hb_012815_020--Hb_124976_010 Hb_000078_040 Hb_000078_040 Hb_012815_020--Hb_000078_040 Hb_004410_060 Hb_004410_060 Hb_012815_020--Hb_004410_060 Hb_022348_020 Hb_022348_020 Hb_012815_020--Hb_022348_020 Hb_007139_010--Hb_019859_030 Hb_007139_010--Hb_124976_010 Hb_007139_010--Hb_000078_040 Hb_007139_010--Hb_004410_060 Hb_007139_010--Hb_022348_020 Hb_019859_030--Hb_124976_010 Hb_019859_030--Hb_000078_040 Hb_019859_030--Hb_004410_060 Hb_019859_030--Hb_022348_020 Hb_124976_010--Hb_004410_060 Hb_124976_010--Hb_000078_040 Hb_124976_010--Hb_022348_020 Hb_000078_040--Hb_022348_020 Hb_003581_040 Hb_003581_040 Hb_000078_040--Hb_003581_040 Hb_007545_160 Hb_007545_160 Hb_004410_060--Hb_007545_160 Hb_004410_060--Hb_000078_040 Hb_022348_020--Hb_003581_040 Hb_002871_200 Hb_002871_200 Hb_022348_020--Hb_002871_200 Hb_078466_020 Hb_078466_020 Hb_022348_020--Hb_078466_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0178001 0 0 0 0.0313139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis