Hb_003849_230

Information

Type -
Description -
Location Contig3849: 179551-180018
Sequence    

Annotation

kegg
ID rcu:RCOM_0793500
description hypothetical protein
nr
ID XP_012085874.1
description PREDICTED: NEP1-interacting protein 2-like [Jatropha curcas]
swissprot
ID Q9M0R7
description RING-H2 finger protein ATL39 OS=Arabidopsis thaliana GN=ATL39 PE=2 SV=1
trembl
ID A0A067JV18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17826 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring-h2 finger protein atl39-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38780: 178401-178587
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_230 0.0 - - PREDICTED: NEP1-interacting protein 2-like [Jatropha curcas]
2 Hb_000575_130 0.0007073324 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Populus euphratica]
3 Hb_000563_450 0.0031436394 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
4 Hb_007292_030 0.0440220973 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000486_050 0.0796955853 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_001854_010 0.1704311255 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
7 Hb_113388_010 0.1705327399 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000243_100 0.2203431364 - - Purple acid phosphatase precursor, putative [Ricinus communis]
9 Hb_004162_110 0.2203724712 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
10 Hb_002800_040 0.2207463792 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_000380_070 0.2381833836 - - conserved hypothetical protein [Ricinus communis]
12 Hb_089032_060 0.2443945687 - - Uncharacterized protein TCM_027342 [Theobroma cacao]
13 Hb_001501_050 0.2533747653 - - Wall associated kinase-like 6, putative [Theobroma cacao]
14 Hb_000684_170 0.2535583346 - - -
15 Hb_000813_080 0.2564982699 - - caspase, putative [Ricinus communis]
16 Hb_189237_010 0.2574893527 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_011362_030 0.2591208991 - - polyprotein [Oryza australiensis]
18 Hb_084611_010 0.2613549911 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
19 Hb_032299_030 0.2664657957 transcription factor TF Family: MYB PREDICTED: transcription factor MYB59 isoform X1 [Jatropha curcas]
20 Hb_012733_080 0.2673519041 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_003849_230 Hb_003849_230 Hb_000575_130 Hb_000575_130 Hb_003849_230--Hb_000575_130 Hb_000563_450 Hb_000563_450 Hb_003849_230--Hb_000563_450 Hb_007292_030 Hb_007292_030 Hb_003849_230--Hb_007292_030 Hb_000486_050 Hb_000486_050 Hb_003849_230--Hb_000486_050 Hb_001854_010 Hb_001854_010 Hb_003849_230--Hb_001854_010 Hb_113388_010 Hb_113388_010 Hb_003849_230--Hb_113388_010 Hb_000575_130--Hb_000563_450 Hb_000575_130--Hb_007292_030 Hb_000575_130--Hb_000486_050 Hb_000575_130--Hb_001854_010 Hb_000575_130--Hb_113388_010 Hb_000563_450--Hb_007292_030 Hb_000563_450--Hb_000486_050 Hb_000563_450--Hb_001854_010 Hb_000563_450--Hb_113388_010 Hb_007292_030--Hb_000486_050 Hb_007292_030--Hb_113388_010 Hb_000380_070 Hb_000380_070 Hb_007292_030--Hb_000380_070 Hb_000486_050--Hb_001854_010 Hb_000243_100 Hb_000243_100 Hb_000486_050--Hb_000243_100 Hb_001854_010--Hb_000243_100 Hb_004162_110 Hb_004162_110 Hb_001854_010--Hb_004162_110 Hb_002800_040 Hb_002800_040 Hb_001854_010--Hb_002800_040 Hb_011362_030 Hb_011362_030 Hb_001854_010--Hb_011362_030 Hb_012733_080 Hb_012733_080 Hb_001854_010--Hb_012733_080 Hb_089032_060 Hb_089032_060 Hb_113388_010--Hb_089032_060 Hb_032299_030 Hb_032299_030 Hb_113388_010--Hb_032299_030 Hb_113388_010--Hb_000380_070 Hb_004352_020 Hb_004352_020 Hb_113388_010--Hb_004352_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.199758 0 0 0 0.0575056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis