Hb_000563_450

Information

Type -
Description -
Location Contig563: 334916-336031
Sequence    

Annotation

kegg
ID mdm:103419743
description uncharacterized LOC103419743
nr
ID XP_008356060.1
description PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
swissprot
ID P93295
description Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana GN=AtMg00310 PE=4 SV=1
trembl
ID S8D906
description Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00896 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48927: 333127-334405
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_450 0.0 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
2 Hb_000575_130 0.0024363105 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Populus euphratica]
3 Hb_003849_230 0.0031436394 - - PREDICTED: NEP1-interacting protein 2-like [Jatropha curcas]
4 Hb_007292_030 0.0471611898 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000486_050 0.076562965 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_001854_010 0.1673329657 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
7 Hb_113388_010 0.1735953936 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000243_100 0.2172712774 - - Purple acid phosphatase precursor, putative [Ricinus communis]
9 Hb_004162_110 0.2173006289 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
10 Hb_002800_040 0.2176747506 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_000380_070 0.2408860172 - - conserved hypothetical protein [Ricinus communis]
12 Hb_089032_060 0.2473473842 - - Uncharacterized protein TCM_027342 [Theobroma cacao]
13 Hb_001501_050 0.2544074809 - - Wall associated kinase-like 6, putative [Theobroma cacao]
14 Hb_000684_170 0.2549651471 - - -
15 Hb_011362_030 0.2560724237 - - polyprotein [Oryza australiensis]
16 Hb_000813_080 0.2573011467 - - caspase, putative [Ricinus communis]
17 Hb_189237_010 0.2582032838 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_084611_010 0.2620399563 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
19 Hb_012733_080 0.2643086987 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_006183_010 0.2650904598 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000563_450 Hb_000563_450 Hb_000575_130 Hb_000575_130 Hb_000563_450--Hb_000575_130 Hb_003849_230 Hb_003849_230 Hb_000563_450--Hb_003849_230 Hb_007292_030 Hb_007292_030 Hb_000563_450--Hb_007292_030 Hb_000486_050 Hb_000486_050 Hb_000563_450--Hb_000486_050 Hb_001854_010 Hb_001854_010 Hb_000563_450--Hb_001854_010 Hb_113388_010 Hb_113388_010 Hb_000563_450--Hb_113388_010 Hb_000575_130--Hb_003849_230 Hb_000575_130--Hb_007292_030 Hb_000575_130--Hb_000486_050 Hb_000575_130--Hb_001854_010 Hb_000575_130--Hb_113388_010 Hb_003849_230--Hb_007292_030 Hb_003849_230--Hb_000486_050 Hb_003849_230--Hb_001854_010 Hb_003849_230--Hb_113388_010 Hb_007292_030--Hb_000486_050 Hb_007292_030--Hb_113388_010 Hb_000380_070 Hb_000380_070 Hb_007292_030--Hb_000380_070 Hb_000486_050--Hb_001854_010 Hb_000243_100 Hb_000243_100 Hb_000486_050--Hb_000243_100 Hb_001854_010--Hb_000243_100 Hb_004162_110 Hb_004162_110 Hb_001854_010--Hb_004162_110 Hb_002800_040 Hb_002800_040 Hb_001854_010--Hb_002800_040 Hb_011362_030 Hb_011362_030 Hb_001854_010--Hb_011362_030 Hb_012733_080 Hb_012733_080 Hb_001854_010--Hb_012733_080 Hb_089032_060 Hb_089032_060 Hb_113388_010--Hb_089032_060 Hb_032299_030 Hb_032299_030 Hb_113388_010--Hb_032299_030 Hb_113388_010--Hb_000380_070 Hb_004352_020 Hb_004352_020 Hb_113388_010--Hb_004352_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.058133 0 0 0 0.0170344
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis