Hb_000486_050

Information

Type -
Description -
Location Contig486: 105965-117807
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000486_050 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_000563_450 0.076562965 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
3 Hb_000575_130 0.0789908199 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Populus euphratica]
4 Hb_003849_230 0.0796955853 - - PREDICTED: NEP1-interacting protein 2-like [Jatropha curcas]
5 Hb_001854_010 0.0913094 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_007292_030 0.1234509374 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000243_100 0.1417384849 - - Purple acid phosphatase precursor, putative [Ricinus communis]
8 Hb_004162_110 0.1417681602 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
9 Hb_002800_040 0.142146413 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_011362_030 0.1810017813 - - polyprotein [Oryza australiensis]
11 Hb_012733_080 0.1893447029 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_006183_010 0.1901367384 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_080147_010 0.1912645499 - - -
14 Hb_078466_020 0.2230988985 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
15 Hb_113388_010 0.2476877861 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002871_200 0.2489490023 - - -
17 Hb_003581_040 0.2499945279 - - hypothetical protein PHAVU_002G080900g [Phaseolus vulgaris]
18 Hb_022348_020 0.2520573638 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_004361_030 0.2693930923 - - PREDICTED: uncharacterized protein LOC104239397 isoform X1 [Nicotiana sylvestris]
20 Hb_000078_040 0.2709835022 - - PREDICTED: uncharacterized protein LOC104907366 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_000486_050 Hb_000486_050 Hb_000563_450 Hb_000563_450 Hb_000486_050--Hb_000563_450 Hb_000575_130 Hb_000575_130 Hb_000486_050--Hb_000575_130 Hb_003849_230 Hb_003849_230 Hb_000486_050--Hb_003849_230 Hb_001854_010 Hb_001854_010 Hb_000486_050--Hb_001854_010 Hb_007292_030 Hb_007292_030 Hb_000486_050--Hb_007292_030 Hb_000243_100 Hb_000243_100 Hb_000486_050--Hb_000243_100 Hb_000563_450--Hb_000575_130 Hb_000563_450--Hb_003849_230 Hb_000563_450--Hb_007292_030 Hb_000563_450--Hb_001854_010 Hb_113388_010 Hb_113388_010 Hb_000563_450--Hb_113388_010 Hb_000575_130--Hb_003849_230 Hb_000575_130--Hb_007292_030 Hb_000575_130--Hb_001854_010 Hb_000575_130--Hb_113388_010 Hb_003849_230--Hb_007292_030 Hb_003849_230--Hb_001854_010 Hb_003849_230--Hb_113388_010 Hb_001854_010--Hb_000243_100 Hb_004162_110 Hb_004162_110 Hb_001854_010--Hb_004162_110 Hb_002800_040 Hb_002800_040 Hb_001854_010--Hb_002800_040 Hb_011362_030 Hb_011362_030 Hb_001854_010--Hb_011362_030 Hb_012733_080 Hb_012733_080 Hb_001854_010--Hb_012733_080 Hb_007292_030--Hb_113388_010 Hb_000380_070 Hb_000380_070 Hb_007292_030--Hb_000380_070 Hb_000243_100--Hb_004162_110 Hb_000243_100--Hb_002800_040 Hb_000243_100--Hb_011362_030 Hb_000243_100--Hb_012733_080 Hb_006183_010 Hb_006183_010 Hb_000243_100--Hb_006183_010 Hb_080147_010 Hb_080147_010 Hb_000243_100--Hb_080147_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0169479 0 0 0 0.00748006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis