Hb_000380_070

Information

Type -
Description -
Location Contig380: 61341-61574
Sequence    

Annotation

kegg
ID rcu:RCOM_0544690
description hypothetical protein
nr
ID XP_002529422.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9STV3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0544690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000380_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004352_020 0.0778869765 - - o-methyltransferase, putative [Ricinus communis]
3 Hb_172864_010 0.0787461245 - - PREDICTED: 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase-like [Jatropha curcas]
4 Hb_089032_060 0.1055245077 - - Uncharacterized protein TCM_027342 [Theobroma cacao]
5 Hb_113388_010 0.1122743379 - - conserved hypothetical protein [Ricinus communis]
6 Hb_032299_030 0.115205804 transcription factor TF Family: MYB PREDICTED: transcription factor MYB59 isoform X1 [Jatropha curcas]
7 Hb_000395_160 0.1654958652 - - hypothetical protein POPTR_0006s25490g [Populus trichocarpa]
8 Hb_041177_010 0.1697442715 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
9 Hb_015784_010 0.1736912349 - - hypothetical protein VITISV_019364 [Vitis vinifera]
10 Hb_005687_020 0.1757131976 - - P66 protein [Hevea brasiliensis]
11 Hb_000979_270 0.1897394982 - - PREDICTED: MLP-like protein 31 [Jatropha curcas]
12 Hb_004096_040 0.1921003423 - - cytochrome P450, putative [Ricinus communis]
13 Hb_000004_150 0.1922886502 - - hypothetical protein RCOM_1382630 [Ricinus communis]
14 Hb_000007_170 0.1922886502 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Nelumbo nucifera]
15 Hb_000010_280 0.1922886502 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
16 Hb_000022_220 0.1922886502 - - PREDICTED: potassium channel KAT3 [Jatropha curcas]
17 Hb_000045_120 0.1922886502 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
18 Hb_000056_320 0.1922886502 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
19 Hb_000066_110 0.1922886502 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01370 [Jatropha curcas]
20 Hb_000072_270 0.1922886502 - - JHL22C18.10 [Jatropha curcas]

Gene co-expression network

sample Hb_000380_070 Hb_000380_070 Hb_004352_020 Hb_004352_020 Hb_000380_070--Hb_004352_020 Hb_172864_010 Hb_172864_010 Hb_000380_070--Hb_172864_010 Hb_089032_060 Hb_089032_060 Hb_000380_070--Hb_089032_060 Hb_113388_010 Hb_113388_010 Hb_000380_070--Hb_113388_010 Hb_032299_030 Hb_032299_030 Hb_000380_070--Hb_032299_030 Hb_000395_160 Hb_000395_160 Hb_000380_070--Hb_000395_160 Hb_004352_020--Hb_172864_010 Hb_004352_020--Hb_089032_060 Hb_004352_020--Hb_032299_030 Hb_005687_020 Hb_005687_020 Hb_004352_020--Hb_005687_020 Hb_004352_020--Hb_000395_160 Hb_172864_010--Hb_089032_060 Hb_172864_010--Hb_032299_030 Hb_041177_010 Hb_041177_010 Hb_172864_010--Hb_041177_010 Hb_002641_100 Hb_002641_100 Hb_172864_010--Hb_002641_100 Hb_089032_060--Hb_032299_030 Hb_089032_060--Hb_113388_010 Hb_089032_060--Hb_000395_160 Hb_000004_150 Hb_000004_150 Hb_089032_060--Hb_000004_150 Hb_000007_170 Hb_000007_170 Hb_089032_060--Hb_000007_170 Hb_113388_010--Hb_032299_030 Hb_007292_030 Hb_007292_030 Hb_113388_010--Hb_007292_030 Hb_113388_010--Hb_004352_020 Hb_003849_230 Hb_003849_230 Hb_113388_010--Hb_003849_230 Hb_032299_030--Hb_000395_160 Hb_032299_030--Hb_000004_150 Hb_032299_030--Hb_000007_170 Hb_000979_270 Hb_000979_270 Hb_000395_160--Hb_000979_270 Hb_000395_160--Hb_005687_020 Hb_000395_160--Hb_000004_150 Hb_000395_160--Hb_000007_170 Hb_000010_280 Hb_000010_280 Hb_000395_160--Hb_000010_280 Hb_000022_220 Hb_000022_220 Hb_000395_160--Hb_000022_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.729672 100.7 0 0 1.4748 5.60955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis