Hb_004352_020

Information

Type -
Description -
Location Contig4352: 41365-59280
Sequence    

Annotation

kegg
ID rcu:RCOM_1372720
description o-methyltransferase, putative (EC:2.1.1.146)
nr
ID XP_002529795.1
description o-methyltransferase, putative [Ricinus communis]
swissprot
ID Q6WUC1
description (RS)-norcoclaurine 6-O-methyltransferase OS=Papaver somniferum GN=PSOMT2 PE=1 SV=1
trembl
ID B9SUX6
description O-methyltransferase, putative OS=Ricinus communis GN=RCOM_1372720 PE=4 SV=1
Gene Ontology
ID GO:0008171
description -norcoclaurine 6-o-methyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42433: 41508-58709
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004352_020 0.0 - - o-methyltransferase, putative [Ricinus communis]
2 Hb_172864_010 0.0366637149 - - PREDICTED: 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase-like [Jatropha curcas]
3 Hb_000380_070 0.0778869765 - - conserved hypothetical protein [Ricinus communis]
4 Hb_089032_060 0.1463399559 - - Uncharacterized protein TCM_027342 [Theobroma cacao]
5 Hb_032299_030 0.1476555442 transcription factor TF Family: MYB PREDICTED: transcription factor MYB59 isoform X1 [Jatropha curcas]
6 Hb_005687_020 0.15243593 - - P66 protein [Hevea brasiliensis]
7 Hb_000395_160 0.1599503097 - - hypothetical protein POPTR_0006s25490g [Populus trichocarpa]
8 Hb_113388_010 0.1679866022 - - conserved hypothetical protein [Ricinus communis]
9 Hb_041177_010 0.168846806 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
10 Hb_015784_010 0.1691452437 - - hypothetical protein VITISV_019364 [Vitis vinifera]
11 Hb_003973_050 0.1693287138 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3-like isoform X1 [Populus euphratica]
12 Hb_004096_040 0.1804688492 - - cytochrome P450, putative [Ricinus communis]
13 Hb_002641_100 0.1812496285 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
14 Hb_013057_010 0.1900109191 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]
15 Hb_000215_120 0.1904628103 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
16 Hb_186671_020 0.1916556997 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_120917_010 0.1925986682 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
18 Hb_000979_270 0.1935071151 - - PREDICTED: MLP-like protein 31 [Jatropha curcas]
19 Hb_005588_150 0.196240445 - - conserved hypothetical protein [Ricinus communis]
20 Hb_163950_060 0.1972216672 - - multidrug resistance pump, putative [Ricinus communis]

Gene co-expression network

sample Hb_004352_020 Hb_004352_020 Hb_172864_010 Hb_172864_010 Hb_004352_020--Hb_172864_010 Hb_000380_070 Hb_000380_070 Hb_004352_020--Hb_000380_070 Hb_089032_060 Hb_089032_060 Hb_004352_020--Hb_089032_060 Hb_032299_030 Hb_032299_030 Hb_004352_020--Hb_032299_030 Hb_005687_020 Hb_005687_020 Hb_004352_020--Hb_005687_020 Hb_000395_160 Hb_000395_160 Hb_004352_020--Hb_000395_160 Hb_172864_010--Hb_000380_070 Hb_172864_010--Hb_089032_060 Hb_172864_010--Hb_032299_030 Hb_041177_010 Hb_041177_010 Hb_172864_010--Hb_041177_010 Hb_002641_100 Hb_002641_100 Hb_172864_010--Hb_002641_100 Hb_000380_070--Hb_089032_060 Hb_113388_010 Hb_113388_010 Hb_000380_070--Hb_113388_010 Hb_000380_070--Hb_032299_030 Hb_000380_070--Hb_000395_160 Hb_089032_060--Hb_032299_030 Hb_089032_060--Hb_113388_010 Hb_089032_060--Hb_000395_160 Hb_000004_150 Hb_000004_150 Hb_089032_060--Hb_000004_150 Hb_000007_170 Hb_000007_170 Hb_089032_060--Hb_000007_170 Hb_032299_030--Hb_113388_010 Hb_032299_030--Hb_000395_160 Hb_032299_030--Hb_000004_150 Hb_032299_030--Hb_000007_170 Hb_005687_020--Hb_000395_160 Hb_163950_060 Hb_163950_060 Hb_005687_020--Hb_163950_060 Hb_011980_020 Hb_011980_020 Hb_005687_020--Hb_011980_020 Hb_004096_040 Hb_004096_040 Hb_005687_020--Hb_004096_040 Hb_186671_020 Hb_186671_020 Hb_005687_020--Hb_186671_020 Hb_001796_010 Hb_001796_010 Hb_005687_020--Hb_001796_010 Hb_000979_270 Hb_000979_270 Hb_000395_160--Hb_000979_270 Hb_000395_160--Hb_000004_150 Hb_000395_160--Hb_000007_170 Hb_000010_280 Hb_000010_280 Hb_000395_160--Hb_000010_280 Hb_000022_220 Hb_000022_220 Hb_000395_160--Hb_000022_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.467334 27.1642 0.0110786 0.160007 0.600706 1.00903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis