Hb_002641_100

Information

Type -
Description -
Location Contig2641: 155171-155959
Sequence    

Annotation

kegg
ID pop:POPTR_0010s15700g
description POPTRDRAFT_769847; hypothetical protein
nr
ID XP_011010636.1
description PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HX38
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s15700g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002641_100 0.0 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
2 Hb_172864_010 0.1666809719 - - PREDICTED: 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase-like [Jatropha curcas]
3 Hb_004352_020 0.1812496285 - - o-methyltransferase, putative [Ricinus communis]
4 Hb_001277_140 0.2095105319 - - PREDICTED: plasma membrane calcium-transporting ATPase 2-like [Takifugu rubripes]
5 Hb_000380_070 0.2112744362 - - conserved hypothetical protein [Ricinus communis]
6 Hb_082219_010 0.222819031 - - Os03g0264300, partial [Oryza sativa Japonica Group]
7 Hb_001922_160 0.2350064444 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
8 Hb_041177_010 0.2485529056 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
9 Hb_001529_030 0.2520216614 - - hypothetical protein PRUPE_ppa024472mg, partial [Prunus persica]
10 Hb_001514_040 0.2530579563 - - l-asparaginase, putative [Ricinus communis]
11 Hb_003973_050 0.2589161176 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3-like isoform X1 [Populus euphratica]
12 Hb_023024_010 0.2610247147 - - PREDICTED: uncharacterized protein LOC105767094 [Gossypium raimondii]
13 Hb_001565_120 0.2624381488 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
14 Hb_006816_510 0.2624918995 - - Pectinesterase inhibitor, putative [Ricinus communis]
15 Hb_089032_060 0.2683749147 - - Uncharacterized protein TCM_027342 [Theobroma cacao]
16 Hb_032299_030 0.2690862019 transcription factor TF Family: MYB PREDICTED: transcription factor MYB59 isoform X1 [Jatropha curcas]
17 Hb_015784_010 0.2696343076 - - hypothetical protein VITISV_019364 [Vitis vinifera]
18 Hb_005687_020 0.2758937674 - - P66 protein [Hevea brasiliensis]
19 Hb_000395_160 0.2762635651 - - hypothetical protein POPTR_0006s25490g [Populus trichocarpa]
20 Hb_001250_120 0.277584627 - - PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]

Gene co-expression network

sample Hb_002641_100 Hb_002641_100 Hb_172864_010 Hb_172864_010 Hb_002641_100--Hb_172864_010 Hb_004352_020 Hb_004352_020 Hb_002641_100--Hb_004352_020 Hb_001277_140 Hb_001277_140 Hb_002641_100--Hb_001277_140 Hb_000380_070 Hb_000380_070 Hb_002641_100--Hb_000380_070 Hb_082219_010 Hb_082219_010 Hb_002641_100--Hb_082219_010 Hb_001922_160 Hb_001922_160 Hb_002641_100--Hb_001922_160 Hb_172864_010--Hb_004352_020 Hb_172864_010--Hb_000380_070 Hb_089032_060 Hb_089032_060 Hb_172864_010--Hb_089032_060 Hb_032299_030 Hb_032299_030 Hb_172864_010--Hb_032299_030 Hb_041177_010 Hb_041177_010 Hb_172864_010--Hb_041177_010 Hb_004352_020--Hb_000380_070 Hb_004352_020--Hb_089032_060 Hb_004352_020--Hb_032299_030 Hb_005687_020 Hb_005687_020 Hb_004352_020--Hb_005687_020 Hb_000395_160 Hb_000395_160 Hb_004352_020--Hb_000395_160 Hb_088084_010 Hb_088084_010 Hb_001277_140--Hb_088084_010 Hb_001529_030 Hb_001529_030 Hb_001277_140--Hb_001529_030 Hb_002760_060 Hb_002760_060 Hb_001277_140--Hb_002760_060 Hb_001277_140--Hb_001922_160 Hb_131956_010 Hb_131956_010 Hb_001277_140--Hb_131956_010 Hb_003053_060 Hb_003053_060 Hb_001277_140--Hb_003053_060 Hb_000380_070--Hb_089032_060 Hb_113388_010 Hb_113388_010 Hb_000380_070--Hb_113388_010 Hb_000380_070--Hb_032299_030 Hb_000380_070--Hb_000395_160 Hb_023024_010 Hb_023024_010 Hb_082219_010--Hb_023024_010 Hb_010531_060 Hb_010531_060 Hb_082219_010--Hb_010531_060 Hb_005269_010 Hb_005269_010 Hb_082219_010--Hb_005269_010 Hb_002269_010 Hb_002269_010 Hb_082219_010--Hb_002269_010 Hb_001703_100 Hb_001703_100 Hb_082219_010--Hb_001703_100 Hb_082219_010--Hb_001529_030 Hb_001514_040 Hb_001514_040 Hb_001922_160--Hb_001514_040 Hb_001922_160--Hb_002760_060 Hb_003893_020 Hb_003893_020 Hb_001922_160--Hb_003893_020 Hb_003442_050 Hb_003442_050 Hb_001922_160--Hb_003442_050 Hb_013057_030 Hb_013057_030 Hb_001922_160--Hb_013057_030 Hb_001277_150 Hb_001277_150 Hb_001922_160--Hb_001277_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.5234 808.03 0.264341 0.259099 32.6197 30.137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3072 2.80678 0.922307 0.0885774 0

CAGE analysis