Hb_001703_100

Information

Type -
Description -
Location Contig1703: 156255-158394
Sequence    

Annotation

kegg
ID bvg:104885230
description uncharacterized LOC104885230
nr
ID XP_010668235.1
description PREDICTED: uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID A0A061G9I5
description Non-LTR retroelement reverse transcriptase OS=Theobroma cacao GN=TCM_027189 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001703_100 0.0 - - PREDICTED: uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris]
2 Hb_002269_010 0.0066955526 - - PREDICTED: WAT1-related protein At4g15540-like [Jatropha curcas]
3 Hb_123056_010 0.0337066597 - - -
4 Hb_005269_010 0.0379051466 - - -
5 Hb_007586_010 0.0775728512 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
6 Hb_010531_060 0.0919356719 - - hypothetical protein B456_010G209400, partial [Gossypium raimondii]
7 Hb_000894_050 0.1305019162 - - -
8 Hb_096257_010 0.131242539 - - -
9 Hb_023024_010 0.1373742122 - - PREDICTED: uncharacterized protein LOC105767094 [Gossypium raimondii]
10 Hb_180003_010 0.1403776851 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
11 Hb_030449_010 0.1414468629 - - -
12 Hb_021470_010 0.1477293809 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_004409_010 0.1517572444 - - -
14 Hb_141990_060 0.1541010198 - - -
15 Hb_003206_040 0.1549862592 - - Auxin efflux carrier component, putative [Ricinus communis]
16 Hb_082219_010 0.2185535342 - - Os03g0264300, partial [Oryza sativa Japonica Group]
17 Hb_011113_020 0.2628638523 - - hypothetical protein CICLE_v10018209mg [Citrus clementina]
18 Hb_003673_030 0.263099394 - - hypothetical protein POPTR_0011s11940g [Populus trichocarpa]
19 Hb_178817_010 0.2652188794 - - protease [Gossypium hirsutum]
20 Hb_000188_030 0.2776575446 - - carboxylic ester hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001703_100 Hb_001703_100 Hb_002269_010 Hb_002269_010 Hb_001703_100--Hb_002269_010 Hb_123056_010 Hb_123056_010 Hb_001703_100--Hb_123056_010 Hb_005269_010 Hb_005269_010 Hb_001703_100--Hb_005269_010 Hb_007586_010 Hb_007586_010 Hb_001703_100--Hb_007586_010 Hb_010531_060 Hb_010531_060 Hb_001703_100--Hb_010531_060 Hb_000894_050 Hb_000894_050 Hb_001703_100--Hb_000894_050 Hb_002269_010--Hb_005269_010 Hb_002269_010--Hb_123056_010 Hb_002269_010--Hb_007586_010 Hb_002269_010--Hb_010531_060 Hb_023024_010 Hb_023024_010 Hb_002269_010--Hb_023024_010 Hb_123056_010--Hb_007586_010 Hb_123056_010--Hb_005269_010 Hb_123056_010--Hb_000894_050 Hb_096257_010 Hb_096257_010 Hb_123056_010--Hb_096257_010 Hb_005269_010--Hb_010531_060 Hb_005269_010--Hb_023024_010 Hb_005269_010--Hb_007586_010 Hb_007586_010--Hb_000894_050 Hb_007586_010--Hb_096257_010 Hb_180003_010 Hb_180003_010 Hb_007586_010--Hb_180003_010 Hb_030449_010 Hb_030449_010 Hb_007586_010--Hb_030449_010 Hb_021470_010 Hb_021470_010 Hb_007586_010--Hb_021470_010 Hb_010531_060--Hb_023024_010 Hb_010531_060--Hb_123056_010 Hb_082219_010 Hb_082219_010 Hb_010531_060--Hb_082219_010 Hb_000894_050--Hb_096257_010 Hb_000894_050--Hb_180003_010 Hb_000894_050--Hb_030449_010 Hb_000894_050--Hb_021470_010 Hb_004409_010 Hb_004409_010 Hb_000894_050--Hb_004409_010 Hb_141990_060 Hb_141990_060 Hb_000894_050--Hb_141990_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0269603 0.045118 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis