Hb_002269_010

Information

Type -
Description -
Location Contig2269: 7162-12528
Sequence    

Annotation

kegg
ID rcu:RCOM_0393140
description Auxin-induced protein 5NG4, putative
nr
ID XP_012092469.1
description PREDICTED: WAT1-related protein At4g15540-like [Jatropha curcas]
swissprot
ID F4IXT6
description WAT1-related protein At3g28060 OS=Arabidopsis thaliana GN=At3g28060 PE=3 SV=1
trembl
ID B9SZH1
description Auxin-induced protein 5NG4, putative OS=Ricinus communis GN=RCOM_0393140 PE=4 SV=1
Gene Ontology
ID GO:0016021
description auxin-induced protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002269_010 0.0 - - PREDICTED: WAT1-related protein At4g15540-like [Jatropha curcas]
2 Hb_001703_100 0.0066955526 - - PREDICTED: uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris]
3 Hb_005269_010 0.0312128272 - - -
4 Hb_123056_010 0.0403986951 - - -
5 Hb_007586_010 0.084252003 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
6 Hb_010531_060 0.0852626339 - - hypothetical protein B456_010G209400, partial [Gossypium raimondii]
7 Hb_023024_010 0.130732695 - - PREDICTED: uncharacterized protein LOC105767094 [Gossypium raimondii]
8 Hb_000894_050 0.1371538311 - - -
9 Hb_096257_010 0.1378939852 - - -
10 Hb_180003_010 0.1470231533 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
11 Hb_030449_010 0.1480916078 - - -
12 Hb_021470_010 0.1543697751 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_004409_010 0.1583947593 - - -
14 Hb_141990_060 0.1607368268 - - -
15 Hb_003206_040 0.1616214151 - - Auxin efflux carrier component, putative [Ricinus communis]
16 Hb_082219_010 0.2120109678 - - Os03g0264300, partial [Oryza sativa Japonica Group]
17 Hb_003673_030 0.2634817483 - - hypothetical protein POPTR_0011s11940g [Populus trichocarpa]
18 Hb_178817_010 0.2665613306 - - protease [Gossypium hirsutum]
19 Hb_011113_020 0.267786057 - - hypothetical protein CICLE_v10018209mg [Citrus clementina]
20 Hb_000188_030 0.2775153639 - - carboxylic ester hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002269_010 Hb_002269_010 Hb_001703_100 Hb_001703_100 Hb_002269_010--Hb_001703_100 Hb_005269_010 Hb_005269_010 Hb_002269_010--Hb_005269_010 Hb_123056_010 Hb_123056_010 Hb_002269_010--Hb_123056_010 Hb_007586_010 Hb_007586_010 Hb_002269_010--Hb_007586_010 Hb_010531_060 Hb_010531_060 Hb_002269_010--Hb_010531_060 Hb_023024_010 Hb_023024_010 Hb_002269_010--Hb_023024_010 Hb_001703_100--Hb_123056_010 Hb_001703_100--Hb_005269_010 Hb_001703_100--Hb_007586_010 Hb_001703_100--Hb_010531_060 Hb_000894_050 Hb_000894_050 Hb_001703_100--Hb_000894_050 Hb_005269_010--Hb_010531_060 Hb_005269_010--Hb_123056_010 Hb_005269_010--Hb_023024_010 Hb_005269_010--Hb_007586_010 Hb_123056_010--Hb_007586_010 Hb_123056_010--Hb_000894_050 Hb_096257_010 Hb_096257_010 Hb_123056_010--Hb_096257_010 Hb_007586_010--Hb_000894_050 Hb_007586_010--Hb_096257_010 Hb_180003_010 Hb_180003_010 Hb_007586_010--Hb_180003_010 Hb_030449_010 Hb_030449_010 Hb_007586_010--Hb_030449_010 Hb_021470_010 Hb_021470_010 Hb_007586_010--Hb_021470_010 Hb_010531_060--Hb_023024_010 Hb_010531_060--Hb_123056_010 Hb_082219_010 Hb_082219_010 Hb_010531_060--Hb_082219_010 Hb_023024_010--Hb_082219_010 Hb_023024_010--Hb_001703_100 Hb_023024_010--Hb_123056_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0666582 0.115255 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis