Hb_023024_010

Information

Type -
Description -
Location Contig23024: 9898-12259
Sequence    

Annotation

kegg
ID pop:POPTR_0001s43820g
description hypothetical protein
nr
ID XP_012442071.1
description PREDICTED: uncharacterized protein LOC105767094 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NVE7
description Uncharacterized protein OS=Gossypium arboreum GN=F383_16817 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023024_010 0.0 - - PREDICTED: uncharacterized protein LOC105767094 [Gossypium raimondii]
2 Hb_010531_060 0.0457250295 - - hypothetical protein B456_010G209400, partial [Gossypium raimondii]
3 Hb_082219_010 0.0826428458 - - Os03g0264300, partial [Oryza sativa Japonica Group]
4 Hb_005269_010 0.099710578 - - -
5 Hb_002269_010 0.130732695 - - PREDICTED: WAT1-related protein At4g15540-like [Jatropha curcas]
6 Hb_001703_100 0.1373742122 - - PREDICTED: uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris]
7 Hb_123056_010 0.1707401057 - - -
8 Hb_007586_010 0.2140038825 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
9 Hb_001529_030 0.2340679451 - - hypothetical protein PRUPE_ppa024472mg, partial [Prunus persica]
10 Hb_002641_100 0.2610247147 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
11 Hb_000894_050 0.2659892384 - - -
12 Hb_096257_010 0.2667150662 - - -
13 Hb_180003_010 0.2756642095 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
14 Hb_030449_010 0.276711194 - - -
15 Hb_009302_010 0.2813435924 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_001277_140 0.282123056 - - PREDICTED: plasma membrane calcium-transporting ATPase 2-like [Takifugu rubripes]
17 Hb_021470_010 0.2828615183 - - polyprotein [Citrus endogenous pararetrovirus]
18 Hb_006816_510 0.2853670785 - - Pectinesterase inhibitor, putative [Ricinus communis]
19 Hb_004409_010 0.2868030295 - - -
20 Hb_141990_060 0.2890959836 - - -

Gene co-expression network

sample Hb_023024_010 Hb_023024_010 Hb_010531_060 Hb_010531_060 Hb_023024_010--Hb_010531_060 Hb_082219_010 Hb_082219_010 Hb_023024_010--Hb_082219_010 Hb_005269_010 Hb_005269_010 Hb_023024_010--Hb_005269_010 Hb_002269_010 Hb_002269_010 Hb_023024_010--Hb_002269_010 Hb_001703_100 Hb_001703_100 Hb_023024_010--Hb_001703_100 Hb_123056_010 Hb_123056_010 Hb_023024_010--Hb_123056_010 Hb_010531_060--Hb_005269_010 Hb_010531_060--Hb_002269_010 Hb_010531_060--Hb_001703_100 Hb_010531_060--Hb_123056_010 Hb_010531_060--Hb_082219_010 Hb_082219_010--Hb_005269_010 Hb_082219_010--Hb_002269_010 Hb_082219_010--Hb_001703_100 Hb_001529_030 Hb_001529_030 Hb_082219_010--Hb_001529_030 Hb_005269_010--Hb_002269_010 Hb_005269_010--Hb_001703_100 Hb_005269_010--Hb_123056_010 Hb_007586_010 Hb_007586_010 Hb_005269_010--Hb_007586_010 Hb_002269_010--Hb_001703_100 Hb_002269_010--Hb_123056_010 Hb_002269_010--Hb_007586_010 Hb_001703_100--Hb_123056_010 Hb_001703_100--Hb_007586_010 Hb_000894_050 Hb_000894_050 Hb_001703_100--Hb_000894_050 Hb_123056_010--Hb_007586_010 Hb_123056_010--Hb_000894_050 Hb_096257_010 Hb_096257_010 Hb_123056_010--Hb_096257_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0526383 0.179918 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis