Hb_131956_010

Information

Type -
Description -
Location Contig131956: 1619-3425
Sequence    

Annotation

kegg
ID rcu:RCOM_1045150
description TMV resistance protein N, putative
nr
ID KDP28980.1
description hypothetical protein JCGZ_19531 [Jatropha curcas]
swissprot
ID Q9XGM3
description Disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=1 SV=1
trembl
ID A0A067K9L2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19531 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09248: 1842-2301
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_131956_010 0.0 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
2 Hb_002235_240 0.1700605481 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
3 Hb_022137_040 0.1858840851 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
4 Hb_129204_060 0.1863546148 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
5 Hb_009838_060 0.1908405919 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004800_190 0.1937976548 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
7 Hb_004724_130 0.1963177276 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
8 Hb_003849_260 0.1968951611 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
9 Hb_009897_020 0.2011934574 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
10 Hb_001277_140 0.2016582021 - - PREDICTED: plasma membrane calcium-transporting ATPase 2-like [Takifugu rubripes]
11 Hb_001863_150 0.204196159 - - VQ motif-containing family protein [Populus trichocarpa]
12 Hb_088084_010 0.2052424747 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
13 Hb_001565_120 0.207813518 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
14 Hb_005656_140 0.2083396397 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
15 Hb_138575_010 0.2120223767 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
16 Hb_154471_010 0.2124994494 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
17 Hb_001141_360 0.2136534153 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
18 Hb_000175_500 0.2138061078 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
19 Hb_000567_080 0.2186050375 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
20 Hb_012760_180 0.218757935 - - Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_131956_010 Hb_131956_010 Hb_002235_240 Hb_002235_240 Hb_131956_010--Hb_002235_240 Hb_022137_040 Hb_022137_040 Hb_131956_010--Hb_022137_040 Hb_129204_060 Hb_129204_060 Hb_131956_010--Hb_129204_060 Hb_009838_060 Hb_009838_060 Hb_131956_010--Hb_009838_060 Hb_004800_190 Hb_004800_190 Hb_131956_010--Hb_004800_190 Hb_004724_130 Hb_004724_130 Hb_131956_010--Hb_004724_130 Hb_002235_240--Hb_129204_060 Hb_000836_120 Hb_000836_120 Hb_002235_240--Hb_000836_120 Hb_003849_260 Hb_003849_260 Hb_002235_240--Hb_003849_260 Hb_000215_410 Hb_000215_410 Hb_002235_240--Hb_000215_410 Hb_001141_360 Hb_001141_360 Hb_002235_240--Hb_001141_360 Hb_001863_150 Hb_001863_150 Hb_002235_240--Hb_001863_150 Hb_001277_140 Hb_001277_140 Hb_022137_040--Hb_001277_140 Hb_000638_210 Hb_000638_210 Hb_022137_040--Hb_000638_210 Hb_000567_080 Hb_000567_080 Hb_022137_040--Hb_000567_080 Hb_022137_040--Hb_009838_060 Hb_012760_010 Hb_012760_010 Hb_022137_040--Hb_012760_010 Hb_129204_060--Hb_000215_410 Hb_129204_060--Hb_000836_120 Hb_002273_050 Hb_002273_050 Hb_129204_060--Hb_002273_050 Hb_005656_140 Hb_005656_140 Hb_129204_060--Hb_005656_140 Hb_002686_280 Hb_002686_280 Hb_129204_060--Hb_002686_280 Hb_003494_060 Hb_003494_060 Hb_009838_060--Hb_003494_060 Hb_009838_060--Hb_001141_360 Hb_009838_060--Hb_012760_010 Hb_009838_060--Hb_005656_140 Hb_001546_110 Hb_001546_110 Hb_009838_060--Hb_001546_110 Hb_185513_010 Hb_185513_010 Hb_009838_060--Hb_185513_010 Hb_009897_020 Hb_009897_020 Hb_004800_190--Hb_009897_020 Hb_004800_190--Hb_001141_360 Hb_004800_190--Hb_003849_260 Hb_001865_060 Hb_001865_060 Hb_004800_190--Hb_001865_060 Hb_162074_010 Hb_162074_010 Hb_004800_190--Hb_162074_010 Hb_004800_190--Hb_003494_060 Hb_000175_500 Hb_000175_500 Hb_004724_130--Hb_000175_500 Hb_004724_130--Hb_001863_150 Hb_001231_080 Hb_001231_080 Hb_004724_130--Hb_001231_080 Hb_004724_130--Hb_002235_240 Hb_000538_190 Hb_000538_190 Hb_004724_130--Hb_000538_190 Hb_004724_130--Hb_001141_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.51923 35.154 0.774061 1.47261 2.7818 2.32582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.39557 1.64676 1.56493 3.57087 0.300282

CAGE analysis