Hb_000567_080

Information

Type transcription factor
Description TF Family: bHLH
Location Contig567: 134405-137811
Sequence    

Annotation

kegg
ID rcu:RCOM_1014730
description DNA binding protein, putative
nr
ID XP_012074626.1
description PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
swissprot
ID Q9S7Y1
description Transcription factor bHLH30 OS=Arabidopsis thaliana GN=BHLH30 PE=1 SV=1
trembl
ID A0A067KLJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10603 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh30-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49111: 134660-135014 , PASA_asmbl_49112: 137069-137393
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_080 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
2 Hb_000215_410 0.1899061609 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
3 Hb_129204_060 0.191672782 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
4 Hb_004032_420 0.2016049206 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
5 Hb_002235_240 0.20433924 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
6 Hb_005841_080 0.2182620522 - - hypothetical protein POPTR_0018s11370g [Populus trichocarpa]
7 Hb_131956_010 0.2186050375 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
8 Hb_002273_080 0.2219403541 - - geranylgeranyl reductase [Monoraphidium neglectum]
9 Hb_005656_140 0.2279932211 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
10 Hb_001863_150 0.2304327082 - - VQ motif-containing family protein [Populus trichocarpa]
11 Hb_002686_280 0.2305443408 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
12 Hb_002273_050 0.2330064915 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
13 Hb_009838_060 0.2350320707 - - conserved hypothetical protein [Ricinus communis]
14 Hb_022137_040 0.243845398 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
15 Hb_000638_210 0.2474155923 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
16 Hb_007379_020 0.2475006554 - - hypothetical protein JCGZ_25958 [Jatropha curcas]
17 Hb_005147_040 0.2475618346 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
18 Hb_004724_130 0.2526215704 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
19 Hb_000836_120 0.2530729242 - - syntaxin, putative [Ricinus communis]
20 Hb_001338_050 0.2534615077 - - hypothetical protein POPTR_0016s05400g [Populus trichocarpa]

Gene co-expression network

sample Hb_000567_080 Hb_000567_080 Hb_000215_410 Hb_000215_410 Hb_000567_080--Hb_000215_410 Hb_129204_060 Hb_129204_060 Hb_000567_080--Hb_129204_060 Hb_004032_420 Hb_004032_420 Hb_000567_080--Hb_004032_420 Hb_002235_240 Hb_002235_240 Hb_000567_080--Hb_002235_240 Hb_005841_080 Hb_005841_080 Hb_000567_080--Hb_005841_080 Hb_131956_010 Hb_131956_010 Hb_000567_080--Hb_131956_010 Hb_002273_050 Hb_002273_050 Hb_000215_410--Hb_002273_050 Hb_000215_410--Hb_129204_060 Hb_002273_080 Hb_002273_080 Hb_000215_410--Hb_002273_080 Hb_000215_410--Hb_002235_240 Hb_000836_120 Hb_000836_120 Hb_000215_410--Hb_000836_120 Hb_001269_690 Hb_001269_690 Hb_000215_410--Hb_001269_690 Hb_129204_060--Hb_002235_240 Hb_129204_060--Hb_000836_120 Hb_129204_060--Hb_002273_050 Hb_005656_140 Hb_005656_140 Hb_129204_060--Hb_005656_140 Hb_002686_280 Hb_002686_280 Hb_129204_060--Hb_002686_280 Hb_001621_070 Hb_001621_070 Hb_004032_420--Hb_001621_070 Hb_005048_020 Hb_005048_020 Hb_004032_420--Hb_005048_020 Hb_031862_040 Hb_031862_040 Hb_004032_420--Hb_031862_040 Hb_000638_210 Hb_000638_210 Hb_004032_420--Hb_000638_210 Hb_004032_420--Hb_000215_410 Hb_002235_240--Hb_000836_120 Hb_003849_260 Hb_003849_260 Hb_002235_240--Hb_003849_260 Hb_001141_360 Hb_001141_360 Hb_002235_240--Hb_001141_360 Hb_001863_150 Hb_001863_150 Hb_002235_240--Hb_001863_150 Hb_005157_010 Hb_005157_010 Hb_005841_080--Hb_005157_010 Hb_000685_060 Hb_000685_060 Hb_005841_080--Hb_000685_060 Hb_003299_010 Hb_003299_010 Hb_005841_080--Hb_003299_010 Hb_005841_080--Hb_002273_080 Hb_005841_080--Hb_000215_410 Hb_000106_070 Hb_000106_070 Hb_005841_080--Hb_000106_070 Hb_131956_010--Hb_002235_240 Hb_022137_040 Hb_022137_040 Hb_131956_010--Hb_022137_040 Hb_131956_010--Hb_129204_060 Hb_009838_060 Hb_009838_060 Hb_131956_010--Hb_009838_060 Hb_004800_190 Hb_004800_190 Hb_131956_010--Hb_004800_190 Hb_004724_130 Hb_004724_130 Hb_131956_010--Hb_004724_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.82665 13.751 0.127635 0.681985 0.617993 1.73009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.128466 1.79392 2.41872 4.11623 0.0528043

CAGE analysis