Hb_004032_420

Information

Type -
Description -
Location Contig4032: 379839-381650
Sequence    

Annotation

kegg
ID rcu:RCOM_1602220
description DNA binding protein, putative
nr
ID XP_012073562.1
description PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
swissprot
ID Q9C9K7
description AT-hook motif nuclear-localized protein 29 OS=Arabidopsis thaliana GN=AHL29 PE=1 SV=1
trembl
ID A0A067KKW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08028 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40068: 376998-394651
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_420 0.0 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
2 Hb_001621_070 0.1726440231 - - hypothetical protein POPTR_0008s05890g [Populus trichocarpa]
3 Hb_000567_080 0.2016049206 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
4 Hb_005048_020 0.2121964908 - - Retrotransposon protein, putative [Theobroma cacao]
5 Hb_031862_040 0.2231606438 - - purine transporter, putative [Ricinus communis]
6 Hb_000638_210 0.2371315557 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
7 Hb_000215_410 0.2416973555 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
8 Hb_001863_150 0.2517045066 - - VQ motif-containing family protein [Populus trichocarpa]
9 Hb_003609_020 0.2559587508 desease resistance Gene Name: Clusterin hypothetical protein CISIN_1g001897mg [Citrus sinensis]
10 Hb_129204_060 0.2560660955 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
11 Hb_054328_010 0.2576567342 - - hypothetical protein POPTR_0019s09820g [Populus trichocarpa]
12 Hb_000634_070 0.2608447062 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
13 Hb_002026_060 0.2617122128 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
14 Hb_000049_090 0.2640556062 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
15 Hb_007007_070 0.2671123274 transcription factor TF Family: TCP hypothetical protein MIMGU_mgv1a022855mg, partial [Erythranthe guttata]
16 Hb_008066_070 0.2672847511 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
17 Hb_002235_240 0.2690330972 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
18 Hb_000210_090 0.2713875077 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
19 Hb_007379_020 0.2738477197 - - hypothetical protein JCGZ_25958 [Jatropha curcas]
20 Hb_000042_250 0.2769339099 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004032_420 Hb_004032_420 Hb_001621_070 Hb_001621_070 Hb_004032_420--Hb_001621_070 Hb_000567_080 Hb_000567_080 Hb_004032_420--Hb_000567_080 Hb_005048_020 Hb_005048_020 Hb_004032_420--Hb_005048_020 Hb_031862_040 Hb_031862_040 Hb_004032_420--Hb_031862_040 Hb_000638_210 Hb_000638_210 Hb_004032_420--Hb_000638_210 Hb_000215_410 Hb_000215_410 Hb_004032_420--Hb_000215_410 Hb_001621_070--Hb_031862_040 Hb_001621_070--Hb_005048_020 Hb_003609_020 Hb_003609_020 Hb_001621_070--Hb_003609_020 Hb_001004_110 Hb_001004_110 Hb_001621_070--Hb_001004_110 Hb_008066_070 Hb_008066_070 Hb_001621_070--Hb_008066_070 Hb_000567_080--Hb_000215_410 Hb_129204_060 Hb_129204_060 Hb_000567_080--Hb_129204_060 Hb_002235_240 Hb_002235_240 Hb_000567_080--Hb_002235_240 Hb_005841_080 Hb_005841_080 Hb_000567_080--Hb_005841_080 Hb_131956_010 Hb_131956_010 Hb_000567_080--Hb_131956_010 Hb_002918_180 Hb_002918_180 Hb_005048_020--Hb_002918_180 Hb_001473_040 Hb_001473_040 Hb_005048_020--Hb_001473_040 Hb_000538_030 Hb_000538_030 Hb_005048_020--Hb_000538_030 Hb_000258_380 Hb_000258_380 Hb_005048_020--Hb_000258_380 Hb_004200_020 Hb_004200_020 Hb_005048_020--Hb_004200_020 Hb_001114_070 Hb_001114_070 Hb_031862_040--Hb_001114_070 Hb_031862_040--Hb_008066_070 Hb_001049_020 Hb_001049_020 Hb_031862_040--Hb_001049_020 Hb_005433_060 Hb_005433_060 Hb_031862_040--Hb_005433_060 Hb_001433_180 Hb_001433_180 Hb_031862_040--Hb_001433_180 Hb_005656_140 Hb_005656_140 Hb_000638_210--Hb_005656_140 Hb_001369_570 Hb_001369_570 Hb_000638_210--Hb_001369_570 Hb_003078_050 Hb_003078_050 Hb_000638_210--Hb_003078_050 Hb_009838_060 Hb_009838_060 Hb_000638_210--Hb_009838_060 Hb_008173_030 Hb_008173_030 Hb_000638_210--Hb_008173_030 Hb_000634_070 Hb_000634_070 Hb_000638_210--Hb_000634_070 Hb_002273_050 Hb_002273_050 Hb_000215_410--Hb_002273_050 Hb_000215_410--Hb_129204_060 Hb_002273_080 Hb_002273_080 Hb_000215_410--Hb_002273_080 Hb_000215_410--Hb_002235_240 Hb_000836_120 Hb_000836_120 Hb_000215_410--Hb_000836_120 Hb_001269_690 Hb_001269_690 Hb_000215_410--Hb_001269_690
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.12034 18.3659 0.852835 0.449861 0.3244 1.5809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.38225 3.69599 8.92095 6.90181 0.530938

CAGE analysis