Hb_001004_110

Information

Type -
Description -
Location Contig1004: 237346-238895
Sequence    

Annotation

kegg
ID rcu:RCOM_1444770
description hypothetical protein
nr
ID XP_002512821.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LT84
description UPF0496 protein At3g19330 OS=Arabidopsis thaliana GN=At3g19330 PE=2 SV=2
trembl
ID B9RGW2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1444770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00295: 238294-238686
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001004_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004328_040 0.1450116144 - - PREDICTED: wall-associated receptor kinase-like 8 [Vitis vinifera]
3 Hb_010029_020 0.1492956534 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
4 Hb_010407_170 0.1829575281 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
5 Hb_004705_140 0.1878327289 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
6 Hb_000676_190 0.1905040497 - - hypothetical protein JCGZ_08279 [Jatropha curcas]
7 Hb_134469_010 0.192740386 - - PREDICTED: protein argonaute 5 isoform X1 [Jatropha curcas]
8 Hb_001840_090 0.1928805353 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
9 Hb_001117_070 0.1929658588 - - 30S ribosomal protein S19, putative [Ricinus communis]
10 Hb_001268_120 0.1940629857 - - conserved hypothetical protein [Ricinus communis]
11 Hb_008864_090 0.1944480997 - - PREDICTED: plastid division protein PDV2-like [Jatropha curcas]
12 Hb_000011_400 0.1985743478 transcription factor TF Family: ERF ethylene-responsive transcription factor 4 [Hevea brasiliensis]
13 Hb_031862_040 0.2002780512 - - purine transporter, putative [Ricinus communis]
14 Hb_003044_030 0.2010905494 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Cicer arietinum]
15 Hb_009701_010 0.2030357732 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
16 Hb_003994_060 0.2031681468 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
17 Hb_011056_020 0.2041212015 transcription factor TF Family: ERF AP2 domain transcription factor RAP2.3, putative [Ricinus communis]
18 Hb_004064_010 0.2058873327 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
19 Hb_000905_170 0.2087178963 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
20 Hb_002577_010 0.2094308098 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]

Gene co-expression network

sample Hb_001004_110 Hb_001004_110 Hb_004328_040 Hb_004328_040 Hb_001004_110--Hb_004328_040 Hb_010029_020 Hb_010029_020 Hb_001004_110--Hb_010029_020 Hb_010407_170 Hb_010407_170 Hb_001004_110--Hb_010407_170 Hb_004705_140 Hb_004705_140 Hb_001004_110--Hb_004705_140 Hb_000676_190 Hb_000676_190 Hb_001004_110--Hb_000676_190 Hb_134469_010 Hb_134469_010 Hb_001004_110--Hb_134469_010 Hb_002577_010 Hb_002577_010 Hb_004328_040--Hb_002577_010 Hb_000011_400 Hb_000011_400 Hb_004328_040--Hb_000011_400 Hb_000318_330 Hb_000318_330 Hb_004328_040--Hb_000318_330 Hb_001123_320 Hb_001123_320 Hb_004328_040--Hb_001123_320 Hb_004328_040--Hb_000676_190 Hb_008864_090 Hb_008864_090 Hb_010029_020--Hb_008864_090 Hb_001427_070 Hb_001427_070 Hb_010029_020--Hb_001427_070 Hb_010029_020--Hb_134469_010 Hb_007904_130 Hb_007904_130 Hb_010029_020--Hb_007904_130 Hb_010021_010 Hb_010021_010 Hb_010029_020--Hb_010021_010 Hb_001104_110 Hb_001104_110 Hb_010407_170--Hb_001104_110 Hb_001268_120 Hb_001268_120 Hb_010407_170--Hb_001268_120 Hb_000905_170 Hb_000905_170 Hb_010407_170--Hb_000905_170 Hb_000009_330 Hb_000009_330 Hb_010407_170--Hb_000009_330 Hb_006538_080 Hb_006538_080 Hb_010407_170--Hb_006538_080 Hb_002631_040 Hb_002631_040 Hb_010407_170--Hb_002631_040 Hb_009701_010 Hb_009701_010 Hb_004705_140--Hb_009701_010 Hb_003994_060 Hb_003994_060 Hb_004705_140--Hb_003994_060 Hb_003609_020 Hb_003609_020 Hb_004705_140--Hb_003609_020 Hb_073562_010 Hb_073562_010 Hb_004705_140--Hb_073562_010 Hb_002435_110 Hb_002435_110 Hb_004705_140--Hb_002435_110 Hb_003929_130 Hb_003929_130 Hb_004705_140--Hb_003929_130 Hb_001018_050 Hb_001018_050 Hb_000676_190--Hb_001018_050 Hb_000347_440 Hb_000347_440 Hb_000676_190--Hb_000347_440 Hb_000140_480 Hb_000140_480 Hb_000676_190--Hb_000140_480 Hb_000152_660 Hb_000152_660 Hb_000676_190--Hb_000152_660 Hb_006913_010 Hb_006913_010 Hb_000676_190--Hb_006913_010 Hb_003044_030 Hb_003044_030 Hb_000676_190--Hb_003044_030 Hb_134469_010--Hb_001427_070 Hb_000733_210 Hb_000733_210 Hb_134469_010--Hb_000733_210 Hb_134469_010--Hb_009701_010 Hb_007590_070 Hb_007590_070 Hb_134469_010--Hb_007590_070 Hb_011311_020 Hb_011311_020 Hb_134469_010--Hb_011311_020 Hb_134469_010--Hb_000140_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33729 1.84415 0.539614 0.485695 0.627191 0.365726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.332992 1.38842 1.5224 3.22318 0.218691

CAGE analysis